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{%extends "sui-base.html"%}
{%from "flash_messages.html" import flash_all_messages%}
{%from "macro-forms.html" import add_http_feature_flags%}
{%from "macro-step-indicator.html" import step_indicator%}
{%block title%}Home{%endblock%}
{%block pagetitle%}Home{%endblock%}
{%block extra_breadcrumbs%}{%endblock%}
{%block contents%}
{%macro add_form_buttons()%}
<div class="row form-buttons">
<div class="col">
<input type="submit"
class="btn btn-primary"
value="use selected species" />
</div>
<div class="col">
<a href="{{url_for('species.create_species', return_to='base.index')}}"
class="btn btn-outline-primary"
title="Create a new species.">Create a new Species</a>
</div>
</div>
{%endmacro%}
<div class="row">{{flash_all_messages()}}</div>
{%if user_logged_in()%}
<div class="row">
<ul class="nav nav-tabs" id="index-actions">
<li class="nav-item presentation">
<button class="nav-link active"
id="upload-data-tab"
data-bs-toggle="tab"
data-bs-target="#upload-data-content"
type="button"
role="tab"
aria-controls="upload-data-content"
aria-selected="false">Upload Data</button></li>
<li class="nav-item presentation">
<button class="nav-link"
id="publications-tab"
data-bs-toggle="tab"
data-bs-target="#publications-content"
type="button"
role="tab"
aria-controls="publications-content"
aria-selected="true">Publications</button></li>
</ul>
</div>
<div class="row">
<div class="tab-content" id="upload-data-tabs-content">
<div class="tab-pane fade show active"
id="upload-data-content"
role="tabpanel"
aria-labelledby="upload-data-content-tab">
<h2 class="heading">Species</h2>
<p>Select the species you want to work with.</p>
<form method="GET" action="{{url_for('base.index')}}" class="form-horizontal">
{{add_http_feature_flags()}}
{{add_form_buttons()}}
{%if species | length != 0%}
<div style="margin-top:1em;">
<table id="tbl-select-species" class="table compact stripe"
data-species-list='{{species | tojson}}'>
<thead>
<tr>
<th></th>
<th>Species Name</th>
</tr>
</thead>
<tbody></tbody>
</table>
</div>
{%else%}
<label class="control-label" for="rdo-cant-find-species">
<input id="rdo-cant-find-species" type="radio" name="species_id"
value="CREATE-SPECIES" />
There are no species to select from. Create the first one.</label>
<div class="col-sm-offset-10 col-sm-2">
<input type="submit"
class="btn btn-primary col-sm-offset-1"
value="continue" />
</div>
{%endif%}
{{add_form_buttons()}}
</form>
</div>
<div class="tab-pane fade"
id="publications-content"
role="tabpanel"
aria-labelledby="publications-content-tab">
<p>View, edit and delete existing publications, and add new
publications by clicking on the button below.</p>
<a href="{{url_for('publications.index')}}"
title="Manage publications."
class="btn btn-primary">manage publications</a>
</div>
</div>
</div>
{%else%}
<div class="row">
<p>The Genenetwork Uploader (<em>gn-uploader</em>) enables upload of new data
into the Genenetwork System. It provides Quality Control over data, and
guidance in case you data does not meet the standards for acceptance.</p>
<p>
<a href="{{authserver_authorise_uri()}}"
title="Sign in to the system"
class="btn btn-primary">Sign in</a>
to get started.</p>
</div>
{%endif%}
{%endblock%}
{%block sidebarcontents%}
<div class="row">
<p>The data in Genenetwork is related to one species or another. Use the form
provided to select from existing species, or click on the
"Create a New Species" button if you cannot find the species you want to
work with.</p>
</div>
<div class="row">
<form id="frm-quick-navigation">
<legend>Quick Navigation</legend>
<div class="form-group">
<label for="fqn-species-id">Species</label>
<select name="species_id">
<option value="">Select species</option>
</select>
</div>
</form>
</div>
{%endblock%}
{%block javascript%}
<script type="text/javascript" src="/static/js/species.js"></script>
{%endblock%}
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