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{%extends "species/sui-base.html"%}
{%from "flash_messages.html" import flash_all_messages%}
{%from "macro-forms.html" import add_http_feature_flags%}
{%from "macro-step-indicator.html" import step_indicator%}
{%from "species/macro-display-species-card.html" import display_sui_species_card%}
{%block title%}View Species{%endblock%}
{%block contents%}
<div class="row">
<h2>{{step_indicator("2")}} Select Species Action</h2>
<p>You can manage species' populations and sequencing platforms here. Select
the tab for the feature you wish to continue working on.</p>
</div>
<div class "row">
<ul class="nav nav-tabs" id="species-actions">
<li class="nav-item presentation">
<button class="nav-link active"
id="populations-tab"
data-bs-toggle="tab"
data-bs-target="#populations-content"
type="button"
role="tab"
aria-controls="populations-content"
aria-selected="true">Populations</button>
</li>
<li class="nav-item presentation">
<button class="nav-link"
id="sequencing-platforms-tab"
data-bs-toggle="tab"
data-bs-target="#sequencing-platforms-content"
type="button"
role="tab"
aria-controls="sequencing-platforms-content"
aria-selected="true">Sequencing Platforms</button>
</li>
</ul>
</div>
<div class="row">
<div class="tab-content" id="species-tabs-content">
<div class="tab-pane fade show active"
id="populations-content"
role="tabpanel"
aria-labelledby="populations-content-tab">
<p>Data belonging to a particular species is further divided into one or more
populations for easier handling. Please select the population you want to work
with.</p>
<form method="GET"
action="{{url_for('species.view_species', species_id=species.SpeciesId)}}"
class="form-horizontal">
{{add_http_feature_flags()}}
{%if populations | length != 0%}
<p class="form-text">Search for, and select the population from the table
below.</p>
<div style="margin-top:3em;">
<table id="tbl-select-population" class="table compact stripe"
data-populations-list='{{populations | tojson}}'>
<thead>
<tr>
<th></th>
<th>Population</th>
</tr>
</thead>
<tbody></tbody>
</table>
</div>
{%else%}
<p class="form-text">
There are no populations currently defined for {{species['FullName']}}
({{species['SpeciesName']}}).</p>
{%endif%}
<div class="row form-buttons">
<div class="col">
<input type="submit"
value="use selected population"
class="btn btn-primary" />
</div>
<div class="col"><strong>OR</strong></div>
<div class="col">
<a href="url_for('species.population.create_population',
species_id=species.SpeciesId,
return_to='species.view_species')"
title="Create a new population for species '{{species.Name}}'."
class="btn btn-outline-info">
Create a new population
</a>
</div>
</div>
</form>
</div>
<div class="tab-pane fade"
id="sequencing-platforms-content"
role="tabpanel"
aria-labelledby="sequencing-platforms-content-tab">
<p>Upload and manage the sequencing platforms for species
'{{species.Name | title}} ({{species.FullName}})'
<a href="{{url_for('species.platforms.list_platforms',
species_id=species.SpeciesId)}}"
title="Manage sequencing platforms for {{species.Name}}">here</a>.
</p>
</div>
</div>
</div>
{%endblock%}
{%block sidebarcontents%}
{{display_sui_species_card(species)}}
{%endblock%}
{%block javascript%}
<script type="text/javascript" src="/static/js/populations.js"></script>
{%endblock%}
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