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{%extends "species/base.html"%}
{%from "flash_messages.html" import flash_all_messages%}
{%block title%}Edit Species{%endblock%}
{%block pagetitle%}Edit Species{%endblock%}
{%block css%}
<style type="text/css">
.card {
margin-top: 0.3em;
border-width: 1px;
border-style: solid;
border-radius: 0.3em;
border-color: #AAAAAA;
padding: 0.5em;
}
</style>
{%endblock%}
{%block lvl2_breadcrumbs%}
<li {%if activelink=="edit-species"%}
class="breadcrumb-item active"
{%else%}
class="breadcrumb-item"
{%endif%}>
<a href="{{url_for('species.edit_species_extra',
species_id=species.SpeciesId)}}">Edit</a>
</li>
{%endblock%}
{%block contents%}
{{flash_all_messages()}}
<div class="row">
<form id="frm-edit-species"
method="POST"
action="{{url_for('species.edit_species_extra',
species_id=species.SpeciesId)}}">
<legend>Edit Extra Detail for Species '{{species.FullName}}'</legend>
<input type="hidden" name="species_id" value="{{species.SpeciesId}}" />
<div class="form-group">
<label for="lbl-species-taxonid" class="form-label">
Taxonomy Id
</label>
<label id="lbl-species-taxonid"
disabled="disabled"
class="form-control">{{species.TaxonomyId}}</label>
</div>
<div class="form-group">
<label for="txt-species-name" class="form-label">
Common Name
</label>
<input type="text"
id="txt-species-name"
name="species_name"
required="required"
value="{{species.SpeciesName}}"
class="form-control" />
<small class="form-text text-muted">
This is the layman's name for the species, e.g. mouse</mall>
</div>
<div class="form-group">
<label for="txt-species-fullname" class="form-label">
Scientific Name
</label>
<input type="text"
id="txt-species-fullname"
name="species_fullname"
required="required"
value="{{species.FullName}}"
class="form-control" />
<small class="form-text text-muted">
A scientific name for the species that mostly adheres to the biological
binomial nomenclature system.</small>
</div>
<div class="form-group">
<label for="select-species-family" class="form-label">
Family
</label>
<select id="select-species-family"
name="species_family"
class="form-control">
<option value="">Select the family</option>
{%for family in families%}
<option value="{{family}}"
{%if species.Family == family%}
selected="selected"
{%endif%}>{{family}}</option>
{%endfor%}
</select>
<small class="form-text text-muted">
A general classification for the species. This is mostly for use in
GeneNetwork's menus.</small>
</div>
<div class="form-group">
<label for="txt-species-familyorderid" class="form-label">
Family Order Id
</label>
<input type="number"
id="txt-species-familyorderid"
name="species_familyorderid"
value="{{species.FamilyOrderId}}"
class="form-control" />
<small class="form-text text-muted">
This is a number that determines the order of the "Family" groupings
above in the GeneNetwork menus. This is an integer value that's manually
assigned.</small>
</div>
<div class="form-group">
<label for="txt-species-orderid" class="form-label">
Order Id
</label>
<input type="number"
id="txt-species-orderid"
name="species_orderid"
value="{{species.OrderId or max_order_id}}"
class="form-control" />
<small class="form-text text-muted">
This integer value determines the order of the species in relation to
each other, but also within the respective "Family" groups.</small>
</div>
<div class="form-group">
<input type="submit" value="Submit Changes" class="btn btn-primary" />
</div>
</form>
</div>
{%endblock%}
{%block sidebarcontents%}
<div class="card">
<div class="card-body">
<h5 class="card-title">Family Order</h5>
<div class="card-text">
<p>The current family order is as follows</p>
<table class="table">
<thead>
<tr>
<th>Family Order Id</th>
<th>Family</th>
</tr>
</thead>
<tbody>
{%for item in family_order%}
<tr>
<td>{{item[0]}}</td>
<td>{{item[1]}}</td>
</tr>
{%endfor%}
</tbody>
</table>
</div>
</div>
</div>
<div class="card">
<div class="card-body">
<h5 class="card-title">Order ID</h5>
<div class="card-text">
<p>The current largest OrderID is: {{max_order_id}}</p>
<p>We recommend giving a new species an order ID that is five more than
the current highest i.e. {{max_order_id + 5}}.</p>
</div>
</div>
</div>
{%endblock%}
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