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{%extends "base.html"%}
{%from "flash_messages.html" import flash_messages%}
{%block title%}Upload R/qtl2 Bundle{%endblock%}
{%block contents%}
<h2 class="heading">Tissue</h2>
<div class="row">
<p>The data you are uploading concerns a tissue, cell, organ, or other
biological material used in an experiment.</p>
<p>Select the appropriate biological material below</p>
</div>
{%if tissues | length > 0%}
<div class="row">
<form method="POST"
action="{{url_for('upload.rqtl2.select_tissue',
species_id=species.SpeciesId, population_id=population.Id)}}"
id="frm:select-probeset-dataset">
<legend class="heading">Select from existing ProbeSet datasets</legend>
{{flash_messages("error-select-tissue")}}
<input type="hidden" name="species_id" value="{{species.SpeciesId}}" />
<input type="hidden" name="population_id"
value="{{population.InbredSetId}}" />
<input type="hidden" name="rqtl2_bundle_file"
value="{{rqtl2_bundle_file}}" />
<input type="hidden" name="geno-dataset-id" value="{{geno_dataset.Id}}" />
<div class="form-group">
<label class="form-label" for="select-tissue">Tissue</label>
<select id="select-tissue"
name="tissueid"
required="required"
{%if tissues | length == 0%}disabled="disabled"{%endif%}
class="form-control"
aria-describedby="help-select-tissue">
<option value="">Select a tissue</option>
{%for tissue in tissues%}
<option value={{tissue.Id}}>
{{tissue.Name}}
{%if tissue.Short_Name%}
-- ({{tissue.Short_Name}})
{%endif%}
</option>
{%endfor%}
</select>
<span id="help-select-tissue" class="form-text text-muted">
Select from existing biological material.</span>
</div>
<button type="submit" class="btn btn-primary">use selected</button>
</form>
</div>
<div class="row">
<p style="color:#FE3535; padding-left:20em; font-weight:bolder;">OR</p>
</div>
{%endif%}
<div class="row">
<p>If you cannot find the biological material in the drop-down above, add it
to the system below.</p>
<form method="POST"
action="{{url_for('upload.rqtl2.create_tissue',
species_id=species.SpeciesId, population_id=population.Id)}}"
id="frm:create-probeset-dataset">
<legend class="heading">Add new tissue, organ or biological material</legend>
{{flash_messages("error-create-tissue")}}
<input type="hidden" name="species_id" value="{{species.SpeciesId}}" />
<input type="hidden" name="population_id"
value="{{population.InbredSetId}}" />
<input type="hidden" name="rqtl2_bundle_file"
value="{{rqtl2_bundle_file}}" />
<input type="hidden" name="geno-dataset-id" value="{{geno_dataset.Id}}" />
<div class="form-group">
<label class="form-label" for="tissue-name">name</label>
<input type="text"
id="txt-tissuename"
name="tissuename"
required="required"
title = "A name to identify the tissue, organ or biological material."
class="form-control"
aria-describedby="help-tissue-name" />
<span class="form-text text-muted" id="help-tissue-name">
A name to identify the tissue, organ or biological material.
</span>
</div>
<div class="form-group">
<label for="txt-shortname" class="form-label">short name</label>
<input type="text" id="txt-tissueshortname" name="tissueshortname"
required="required"
maxlength="7"
title="A short name (e.g. 'Mam') for the biological material."
class="form-control"
aria-describedby="help-tissue-short-name" />
<span class="form-text text-muted" id="help-tissue-short-name">
Provide a short name for the tissue, organ or biological material used in
the experiment.
</span>
</div>
<button type="submit" class="btn btn-primary" />add new material</button>
</form>
</div>
{%endblock%}
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