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{%extends "base.html"%}
{%from "flash_messages.html" import flash_messages%}
{%block title%}Upload R/qtl2 Bundle{%endblock%}
{%block contents%}
<h2 class="heading">Select Genotypes Dataset</h2>
<div class="row">
<p>Your R/qtl2 files bundle contains a "geno" specification. You will
therefore need to select from one of the existing Genotype datasets or
create a new one.</p>
<p>This is the dataset where your data will be organised under.</p>
</div>
<div class="row">
<form id="frm-upload-rqtl2-bundle"
action="{{url_for('upload.rqtl2.select_geno_dataset',
species_id=species.SpeciesId,
population_id=population.InbredSetId)}}"
method="POST"
enctype="multipart/form-data">
<legend class="heading">select from existing genotype datasets</legend>
<input type="hidden" name="species_id" value="{{species.SpeciesId}}" />
<input type="hidden" name="population_id"
value="{{population.InbredSetId}}" />
<input type="hidden" name="rqtl2_bundle_file"
value="{{rqtl2_bundle_file}}" />
{{flash_messages("error-rqtl2-select-geno-dataset")}}
<div class="form-group">
<legend>Datasets</legend>
<label for="select:geno-datasets" class="form-label">Dataset</label>
<select id="select:geno-datasets"
name="geno-dataset-id"
required="required"
{%if datasets | length == 0%}
disabled="disabled"
{%endif%}
class="form-control"
aria-describedby="help-geno-dataset-select-dataset">
<option value="">Select dataset</option>
{%for dset in datasets%}
<option value="{{dset['Id']}}">{{dset["Name"]}} ({{dset["FullName"]}})</option>
{%endfor%}
</select>
<span id="help-geno-dataset-select-dataset" class="form-text text-muted">
Select from the existing genotype datasets for species
{{species.SpeciesName}} ({{species.FullName}}).
</span>
</div>
<button type="submit" class="btn btn-primary">select dataset</button>
</form>
</div>
<div class="row">
<p style="color:#FE3535; padding-left:20em; font-weight:bolder;">OR</p>
</div>
<div class="row">
<form id="frm-upload-rqtl2-bundle"
action="{{url_for('upload.rqtl2.create_geno_dataset',
species_id=species.SpeciesId,
population_id=population.InbredSetId)}}"
method="POST"
enctype="multipart/form-data">
<legend class="heading">create a new genotype dataset</legend>
<input type="hidden" name="species_id" value="{{species.SpeciesId}}" />
<input type="hidden" name="population_id"
value="{{population.InbredSetId}}" />
<input type="hidden" name="rqtl2_bundle_file"
value="{{rqtl2_bundle_file}}" />
{{flash_messages("error-rqtl2-create-geno-dataset")}}
<div class="form-group">
<label for="txt:dataset-name" class="form-label">Name</label>
<input type="text"
id="txt:dataset-name"
name="dataset-name"
maxlength="100"
required="required"
class="form-control"
aria-describedby="help-geno-dataset-name" />
<span id="help-geno-dataset-name" class="form-text text-muted">
Provide the new name for the genotype dataset, e.g. "BXDGeno"
</span>
</div>
<div class="form-group">
<label for="txt:dataset-fullname" class="form-label">Full Name</label>
<input type="text"
id="txt:dataset-fullname"
name="dataset-fullname"
required="required"
maxlength="100"
class="form-control"
aria-describedby="help-geno-dataset-fullname" />
<span id="help-geno-dataset-fullname" class="form-text text-muted">
Provide a longer name that better describes the genotype dataset, e.g.
"BXD Genotypes"
</span>
</div>
<div class="form-group">
<label for="txt:dataset-shortname" class="form-label">Short Name</label>
<input type="text"
id="txt:dataset-shortname"
name="dataset-shortname"
maxlength="100"
class="form-control"
aria-describedby="help-geno-dataset-shortname" />
<span id="help-geno-dataset-shortname" class="form-text text-muted">
Provide a short name for the genotype dataset. This is optional. If not
provided, we'll default to the same value as the "Name" above.
</span>
</div>
<div class="form-group">
<input type="checkbox"
id="chk:dataset-public"
name="dataset-public"
checked="checked"
class="form-check"
aria-describedby="help-geno-datasent-public" />
<label for="chk:dataset-public" class="form-check-label">Public?</label>
<span id="help-geno-dataset-public" class="form-text text-muted">
Specify whether the dataset will be available publicly. Check to make the
dataset publicly available and uncheck to limit who can access the dataset.
</span>
</div>
<button type="submit" class="btn btn-primary">create new dataset</button>
</form>
</div>
{%endblock%}
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