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{%extends "populations/sui-base.html"%}
{%from "macro-step-indicator.html" import step_indicator%}
{%from "populations/macro-display-population-card.html" import display_sui_population_card%}
{%block contents%}
<div class="row">
<h2>{{step_indicator("3")}} Choose population action</h2>
<p>The tabs below present the actions/features available under a population.
Do have a look at each to decide your next option.</p>
</div>
<div class="row">
<ul class="nav nav-tabs" id="population-actions">
<li class="nav-item presentation">
<button class="nav-link"
id="samples-tab"
data-bs-toggle="tab"
data-bs-target="#samples-content"
type="button"
role="tab"
aria-controls="samples-content"
aria-selected="true">Samples</button></li>
<li class="nav-item presentation">
<button class="nav-link active"
id="phenotypes-tab"
data-bs-toggle="tab"
data-bs-target="#phenotypes-content"
type="button"
role="tab"
aria-controls="phenotypes-content"
aria-selected="false">Phenotypes</button></li>
{%if view_under_construction%}
<li class="nav-item presentation">
<button class="nav-link"
id="genotypes-tab"
data-bs-toggle="tab"
data-bs-target="#genotypes-content"
type="button"
role="tab"
aria-controls="genotypes-content"
aria-selected="false">Genotypes</button></li>
<li class="nav-item presentation">
<button class="nav-link"
id="expression-data-tab"
data-bs-toggle="tab"
data-bs-target="#expression-data-content"
type="button"
role="tab"
aria-controls="expression-data-content"
aria-selected="false">Expression-Data</button></li>
{%endif%}
</ul>
</div>
<div class="row">
<div class="tab-content" id="myTabContent">
<div class="tab-pane fade"
id="samples-content"
role="tabpanel"
aria-labelledby="samples-content-tab">
<p>Think of a <strong>"sample"</strong> as say a single case or individual
in the experiment. It could even be a single strain (where applicable)
under consideration.</p>
<p>This is a convenience feature for when you want to upload phenotypes to
the system, but do not have the genotypes data ready yet.</p>
<p>Please click the button below to provide the samples that will be used
in your data.</p>
<a href="{{url_for('species.populations.samples.list_samples',
species_id=species.SpeciesId,
population_id=population.Id,
streamlined_ui=streamlined_ui)}}"
title="Upload samples for population '{{population['Name']}}'"
class="btn btn-primary">Upload Samples</a>
</div>
<div class="tab-pane fade show active"
id="phenotypes-content"
role="tabpanel"
aria-labelledby="phenotypes-content-tab">
<p>This will allow you to upload new phenotypes intended for publication
(or already published) to the system.</p>
<p>The new phenotypes will be grouped under the
"<em>{{population.FullName}} ({{population.Name}})</em>" population of
the "<em>{{species.FullName}} ({{species.Name}})</em>" species, as
selected in previous steps.</p>
<p>Please click the button below to proceed.</p>
<a href="{{url_for('species.populations.phenotypes.view_dataset',
species_id=species.SpeciesId,
population_id=population.Id,
dataset_id=dataset.Id,
streamlined_ui=streamlined_ui)}}"
title="Upload phenotype data for population '{{population['Name']}}'"
class="btn btn-primary">Upload Phenotypes</a>
</div>
<div class="tab-pane fade"
id="genotypes-content"
role="tabpanel"
aria-labelledby="genotypes-content-tab">
<p>This allows you to upload the data that concerns your genotypes.</p>
<p>Any samples/individuals/cases/strains that do not already exist in the
system will be added. This does not delete any existing data.</p>
<a href="{{url_for('species.populations.genotypes.list_genotypes',
species_id=species.SpeciesId,
population_id=population.Id,
streamlined_ui=streamlined_ui)}}"
title="Upload genotype information for the '{{population.FullName}}' population of the '{{species.FullName}}' species."
class="btn btn-primary">upload genotypes</a>
</div>
<div class="tab-pane fade" id="expression-data-content" role="tabpanel" aria-labelledby="expression-data-content-tab">
<p>Upload expression data (mRNA data) for this population.</p>
<a href="#" title="" class="btn btn-primary">upload genotypes</a>
</div>
</div>
</div>
{%endblock%}
{%block sidebarcontents%}
{{display_sui_population_card(species, population)}}
{%endblock%}
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