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{%extends "base.html"%}
{%from "flash_messages.html" import flash_messages%}
{%block title%}Upload R/qtl2 Bundle{%endblock%}
{%block contents%}
<h2 class="heading">Select Genotypes Dataset</h2>
<div class="row">
<p>Your R/qtl2 files bundle could contain a "geno" specification. You will
therefore need to select from one of the existing Genotype datasets or
create a new one.</p>
<p>This is the dataset where your data will be organised under.</p>
</div>
<div class="row">
<form id="frm-upload-rqtl2-bundle"
action="{{url_for('expression-data.rqtl2.select_geno_dataset',
species_id=species.SpeciesId,
population_id=population.InbredSetId)}}"
method="POST"
enctype="multipart/form-data">
<legend class="heading">select from existing genotype datasets</legend>
<input type="hidden" name="species_id" value="{{species.SpeciesId}}" />
<input type="hidden" name="population_id"
value="{{population.InbredSetId}}" />
<input type="hidden" name="rqtl2_bundle_file"
value="{{rqtl2_bundle_file}}" />
{{flash_messages("error-rqtl2-select-geno-dataset")}}
<div class="form-group">
<legend>Datasets</legend>
<label for="select:geno-datasets" class="form-label">Dataset</label>
<select id="select:geno-datasets"
name="geno-dataset-id"
required="required"
{%if datasets | length == 0%}
disabled="disabled"
{%endif%}
class="form-control"
aria-describedby="help-geno-dataset-select-dataset">
<option value="">Select dataset</option>
{%for dset in datasets%}
<option value="{{dset['Id']}}">{{dset["Name"]}} ({{dset["FullName"]}})</option>
{%endfor%}
</select>
<span id="help-geno-dataset-select-dataset" class="form-text text-muted">
Select from the existing genotype datasets for species
{{species.SpeciesName}} ({{species.FullName}}).
</span>
</div>
<button type="submit" class="btn btn-primary">select dataset</button>
</form>
</div>
<div class="row">
<p>If the genotype dataset you need does not currently exist for your dataset,
go the <a href="{{url_for(
'species.populations.genotypes.create_dataset',
species_id=species.SpeciesId,
population_id=population.Id)}}"
title="Create a new genotypes dataset for {{species.FullName}}">
genotypes page to create the genotype dataset</a></p>
</div>
{%endblock%}
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