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{%extends "base.html"%}
{%from "flash_messages.html" import flash_messages%}
{%block title%}Data Upload{%endblock%}
{%block contents%}
<h1 class="heading">R/qtl2 data upload</h1>
<h2>R/qtl2 Upload</h2>
<div class="row">
<form method="POST" action="{{url_for('expression-data.rqtl2.select_species')}}"
id="frm-rqtl2-upload">
<legend class="heading">upload R/qtl2 bundle</legend>
{{flash_messages("error-rqtl2")}}
<div class="form-group">
<label for="select:species" class="form-label">Species</label>
<select id="select:species"
name="species_id"
required="required"
class="form-control">
<option value="">Select species</option>
{%for spec in species%}
<option value="{{spec.SpeciesId}}">{{spec.MenuName}}</option>
{%endfor%}
</select>
<small class="form-text text-muted">
Data that you upload to the system should belong to a know species.
Here you can select the species that you wish to upload data for.
</small>
</div>
<input type="submit" class="btn btn-primary" value="submit" />
</form>
</div>
<div class="row">
<h2 class="heading">R/qtl2 Bundles</h2>
<div class="explainer">
<p>This feature combines and extends the two upload methods below. Instead of
uploading one item at a time, the R/qtl2 bundle you upload can contain both
the genotypes data (samples/individuals/cases and their data) and the
expression data.</p>
<p>The R/qtl2 bundle, additionally, can contain extra metadata, that neither
of the methods below can handle.</p>
<a href="{{url_for('expression-data.rqtl2.select_species')}}"
title="Upload a zip bundle of R/qtl2 files">
<button class="btn btn-primary">upload R/qtl2 bundle</button></a>
</div>
</div>
{%endblock%}
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