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{%extends "platforms/base.html"%}
{%from "flash_messages.html" import flash_all_messages%}
{%from "species/macro-display-species-card.html" import display_species_card%}
{%block title%}Platforms — Create Platforms{%endblock%}
{%block pagetitle%}Platforms — Create Platforms{%endblock%}
{%block lvl3_breadcrumbs%}
<li {%if activelink=="create-platform"%}
class="breadcrumb-item active"
{%else%}
class="breadcrumb-item"
{%endif%}>
<a href="{{url_for('species.platforms.create_platform',
species_id=species.SpeciesId)}}">create platform</a>
</li>
{%endblock%}
{%block contents%}
{{flash_all_messages()}}
<div class="row">
<h2>Create New Platform</h2>
<p>You can create a new genetic sequencing platform below.</p>
</div>
<div class="row">
<form id="frm-create-platform"
method="POST"
action="{{url_for('species.platforms.create_platform',
species_id=species.SpeciesId)}}">
<div class="form-group">
<label for="txt-geo-platform" class="form-label">GEO Platform</label>
<input type="text"
id="txt-geo-platform"
name="geo-platform"
required="required"
class="form-control" />
<small class="form-text text-muted">
<p>This is the platform's
<a href="https://www.ncbi.nlm.nih.gov/geo/browse/?view=platforms&tax={{species.TaxonomyId}}"
title="Platforms for '{{species.FullName}}' on NCBI">
accession value on NCBI</a>. If you do not know the value, click the
link and search on NCBI for species '{{species.FullName}}'.</p></small>
</div>
<div class="form-group">
<label for="txt-platform-name" class="form-label">Platform Name</label>
<input type="text"
id="txt-platform-name"
name="platform-name"
required="required"
class="form-control" />
<small class="form-text text-muted">
<p>This is name of the genetic sequencing platform.</p></small>
</div>
<div class="form-group">
<label for="txt-platform-shortname" class="form-label">
Platform Short Name</label>
<input type="text"
id="txt-platform-shortname"
name="platform-shortname"
required="required"
class="form-control" />
<small class="form-text text-muted">
<p>Use the following conventions for this field:
<ol>
<li>Start with a 4-letter vendor code, e.g. "Affy" for "Affymetrix", "Illu" for "Illumina", etc.</li>
<li>Append an underscore to the 4-letter vendor code</li>
<li>Use the name of the array given by the vendor, e.g. U74AV2, MOE430A, etc.</li>
</ol>
</p>
</small>
</div>
<div class="form-group">
<label for="txt-platform-title" class="form-label">Platform Title</label>
<input type="text"
id="txt-platform-title"
name="platform-title"
required="required"
class="form-control" />
<small class="form-text text-muted">
<p>The full platform title. Sometimes, this is the same as the Platform
Name above.</p></small>
</div>
<div class="form-group">
<label for="txt-go-tree-value" class="form-label">GO Tree Value</label>
<input type="text"
id="txt-go-tree-value"
name="go-tree-value"
class="form-control" />
<small class="form-text text-muted">
<p>This is a Chip identification value useful for analysis with the
<strong>
<a href="https://www.geneweaver.org/"
title="Go to the GeneWeaver site."
target="_blank">GeneWeaver</a></strong>
and
<strong>
<a href="https://www.webgestalt.org/"
title="Go to the WEB-based GEne SeT AnaLysis Toolkit site."
target="_blank">WebGestalt</a></strong>
tools.<br />
This can be left blank for custom platforms.</p></small>
</div>
<div class="form-group">
<input type="submit"
value="create new platform"
class="btn btn-primary" />
</div>
</form>
</div>
{%endblock%}
{%block sidebarcontents%}
{{display_species_card(species)}}
{%endblock%}
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