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{%extends "phenotypes/base.html"%}
{%from "flash_messages.html" import flash_all_messages%}
{%from "populations/macro-display-population-card.html" import display_population_card%}
{%block title%}Phenotypes{%endblock%}
{%block pagetitle%}Phenotypes{%endblock%}
{%block lvl4_breadcrumbs%}
<li {%if activelink=="view-phenotype"%}
class="breadcrumb-item active"
{%else%}
class="breadcrumb-item"
{%endif%}>
<a href="{{url_for('species.populations.phenotypes.view_phenotype',
species_id=species.SpeciesId,
population_id=population.Id,
dataset_id=dataset.Id,
xref_id=xref_id)}}">View Datasets</a>
</li>
{%endblock%}
{%block contents%}
{{flash_all_messages()}}
<div class="row">
<div class="panel panel-default">
<div class="panel-heading"><strong>Basic Phenotype Details</strong></div>
<table class="table">
<tbody>
<tr>
<td><strong>Phenotype</strong></td>
<td>{{phenotype.Post_publication_description or phenotype.Pre_publication_abbreviation or phenotype.Original_description}}
</tr>
<tr>
<td><strong>Database</strong></td>
<td>{{dataset.FullName}}</td>
</tr>
<tr>
<td><strong>Units</strong></td>
<td>{{phenotype.Units}}</td>
</tr>
{%for key,value in publish_data.items()%}
<tr>
<td><strong>{{key}}</strong></td>
<td>{{value}}</td>
</tr>
{%else%}
<tr>
<td colspan="2" class="text-muted">
<span class="glyphicon glyphicon-exclamation-sign"></span>
No publication data found.
</td>
</tr>
{%endfor%}
</tbody>
</table>
</div>
</div>
{%if "group:resource:edit-resource" in privileges
or "group:resource:delete-resource" in privileges%}
<div class="row">
<form action="#edit-delete-phenotype"
method="POST"
id="frm-delete-phenotype">
<input type="hidden" name="species_id" value="{{species.SpeciesId}}" />
<input type="hidden" name="population_id" value="{{population.Id}}" />
<input type="hidden" name="dataset_id" value="{{dataset.Id}}" />
<input type="hidden" name="phenotype_id" value="{{phenotype.Id}}" />
<div class="btn-group btn-group-justified">
<div class="btn-group">
{%if "group:resource:edit-resource" in privileges%}
<input type="submit"
title="Edit the values for the phenotype. This is meant to be used when you need to update only a few values."
class="btn btn-primary not-implemented"
value="edit" />
{%endif%}
</div>
<div class="btn-group"></div>
<div class="btn-group">
{%if "group:resource:delete-resource" in privileges%}
<input type="submit"
title="Delete the entire phenotype. This is useful when you need to change data for most or all of the fields for this phenotype."
class="btn btn-danger not-implemented"
disabled="disabled"
value="delete" />
{%endif%}
</div>
</div>
</form>
</div>
{%endif%}
<div class="row">
<div class="panel panel-default">
<div class="panel-heading"><strong>Phenotype Data</strong></div>
{%if "group:resource:view-resource" in privileges%}
<table class="table">
<thead>
<tr>
<th>#</th>
<th>Sample</th>
<th>Value</th>
{%if has_se%}
<th>SE: {{has_se}}</th>
<th>N</th>
{%endif%}
</tr>
</thead>
<tbody>
{%for item in phenotype.data%}
<tr>
<td>{{loop.index}}</td>
<td>{{item.StrainName}}</td>
<td>{{item.value}}</td>
{%if has_se%}
<td>{{item.error or "-"}}</td>
<td>{{item.count or "-"}}</td>
{%endif%}
</tr>
{%endfor%}
</tbody>
</table>
{%else%}
<p class="text-danger">
<span class="glyphicon glyphicon-exclamation-sign"></span>
You do not currently have privileges to view this phenotype in greater
detail.
</p>
{%endif%}
</div>
</div>
{%endblock%}
{%block sidebarcontents%}
{{display_population_card(species, population)}}
{%endblock%}
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