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{%extends "phenotypes/base.html"%}
{%from "flash_messages.html" import flash_all_messages%}
{%from "macro-table-pagination.html" import table_pagination%}
{%from "populations/macro-display-population-card.html" import display_population_card%}
{%block title%}Phenotypes{%endblock%}
{%block pagetitle%}Phenotypes{%endblock%}
{%block lvl4_breadcrumbs%}
<li {%if activelink=="view-dataset"%}
class="breadcrumb-item active"
{%else%}
class="breadcrumb-item"
{%endif%}>
<a href="{{url_for('species.populations.phenotypes.view_dataset',
species_id=species.SpeciesId,
population_id=population.Id,
dataset_id=dataset.Id)}}">View</a>
</li>
{%endblock%}
{%block contents%}
{{flash_all_messages()}}
<div class="row">
<p>The basic dataset details are:</p>
<table class="table">
<thead>
<tr>
<th>Name</th>
<th>Full Name</th>
<th>Short Name</th>
</tr>
</thead>
<tbody>
<tr>
<td>{{dataset.Name}}</td>
<td>{{dataset.FullName}}</td>
<td>{{dataset.ShortName}}</td>
</tr>
</tbody>
</table>
</div>
<div class="row">
<p><a href="{{url_for('species.populations.phenotypes.add_phenotypes',
species_id=species.SpeciesId,
population_id=population.Id,
dataset_id=dataset.Id)}}"
title="Add a bunch of phenotypes"
class="btn btn-primary">Add phenotypes</a></p>
</div>
<div class="row">
<h2>Phenotype Data</h2>
<p>Click on any of the phenotypes in the table below to view and edit that
phenotype's data.</p>
<p>Use the search to filter through all the phenotypes and find specific
phenotypes of interest.</p>
</div>
<div class="row">
<div style="padding-bottom: 0.5em;">
<a href="#" class="btn btn-info" id="btn-phenotypes-list-select-all">select all</a>
<a href="#" class="btn btn-info" id="btn-phenotypes-list-deselect-all">deselect all</a>
<a href="#" class="btn btn-info" id="btn-phenotypes-list-edit">edit</a>
</div>
<table id="tbl-phenotypes-list" class="table compact stripe cell-border">
<thead>
<tr>
<th></th>
<th>Index</th>
<th>Record</th>
<th>Description</th>
</tr>
</thead>
<tbody></tbody>
</table>
</div>
{%endblock%}
{%block sidebarcontents%}
{{display_population_card(species, population)}}
{%endblock%}
{%block javascript%}
<script type="text/javascript">
$(function() {
dtAddCommonHandlers("#tbl-phenotypes-list");
var data = {{phenotypes | tojson}};
var dtPhenotypesList = $("#tbl-phenotypes-list").DataTable({
select: true,
select: {
selector: "td:first-child.chk-row-select"
},
scroller: true,
sDom: "iti",
scrollY: "100vh",
scrollCollapse: true,
responsive: true,
data: data,
rowId: function(pheno) {
return `${pheno.InbredSetCode}_${pheno.xref_id}`;
},
columns: [
{
data: function(pheno) {
return `<input type="checkbox" name="selected-phenotypes" `
+ `id="chk-selected-phenotypes-${pheno.InbredSetCode}_${pheno.xref_id}" `
+ `value="${pheno.InbredSetCode}_${pheno.xref_id}" `
+ `class="chk-row-select" />`
}
},
{data: "sequence_number"},
{
data: function(pheno, type, set, meta) {
var spcs_id = {{species.SpeciesId}};
var pop_id = {{population.Id}};
var dtst_id = {{dataset.Id}};
return `<a href="/species/${spcs_id}` +
`/populations/${pop_id}` +
`/phenotypes/datasets/${dtst_id}` +
`/phenotype/${pheno.xref_id}` +
`" target="_blank">` +
`${pheno.InbredSetCode}_${pheno.xref_id}` +
`</a>`;
}
},
{
data: function(pheno) {
return (pheno.Post_publication_description ||
pheno.Original_description ||
pheno.Pre_publication_description);
}
}
],
drawCallback: function(settings) {
$(this[0]).find("tbody tr").each((idx, row) => {
var arow = $(row);
var checkboxOrRadio = arow.find(".chk-row-select");
if (checkboxOrRadio) {
if (arow.hasClass("selected")) {
checkboxOrRadio.prop("checked", true);
} else {
checkboxOrRadio.prop("checked", false);
}
}
});
}
});
$("#btn-phenotypes-list-select-all").on("click", (event) => {
dtPhenotypesList.rows().select();
dtPhenotypesList.rows().nodes().each((node, idx) => {
$(node).find(".chk-row-select").prop("checked", true);
});
});
$("#btn-phenotypes-list-deselect-all").on("click", (event) => {
dtPhenotypesList.rows().deselect();
dtPhenotypesList.rows().nodes().each((node, idx) => {
$(node).find(".chk-row-select").prop("checked", false);
});
});
});
</script>
{%endblock%}
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