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{%extends "phenotypes/base.html"%}
{%from "cli-output.html" import cli_output%}
{%from "flash_messages.html" import flash_all_messages%}
{%from "macro-table-pagination.html" import table_pagination%}
{%from "phenotypes/macro-display-pheno-dataset-card.html" import display_pheno_dataset_card%}
{%block extrameta%}
{%if not job%}
<meta http-equiv="refresh"
content="20; url={{url_for('species.populations.phenotypes.view_dataset', species_id=species.SpeciesId,
population_id=population.Id,
dataset_id=dataset.Id)}}" />
{%endif%}
{%endblock%}
{%block title%}Phenotypes{%endblock%}
{%block pagetitle%}Phenotypes{%endblock%}
{%block lvl4_breadcrumbs%}
<li {%if activelink=="add-phenotypes"%}
class="breadcrumb-item active"
{%else%}
class="breadcrumb-item"
{%endif%}>
<a href="{{url_for('species.populations.phenotypes.add_phenotypes',
species_id=species.SpeciesId,
population_id=population.Id,
dataset_id=dataset.Id)}}">View Datasets</a>
</li>
{%endblock%}
{%block contents%}
{%if job%}
<div class="row">
<h3 class="heading">Data Review</h3>
<p class="text-info"><strong>
The data has <em>NOT</em> been added/saved yet. Review the details below
and click "Continue" to save the data.</strong></p>
<p>The “<strong>{{dataset.FullName}}</strong>” dataset from the
“<strong>{{population.FullName}}</strong>” population of the
species “<strong>{{species.SpeciesName}} ({{species.FullName}})</strong>”
will be updated as follows:</p>
<ul>
{%if publication%}
<li>All {{summary.get("pheno", {}).get("total-data-rows", "0")}} phenotypes
are linked to the following publication:
<ul>
<li><strong>Publication Title:</strong>
{{publication.Title or "—"}}</li>
<li><strong>Author(s):</strong>
{{publication.Authors or "—"}}</li>
</ul>
</li>
{%endif%}
{%for ftype in ("phenocovar", "pheno", "phenose", "phenonum")%}
{%if summary.get(ftype, False)%}
<li>A total of {{summary[ftype]["number-of-files"]}} files will be processed
adding {%if ftype == "phenocovar"%}(possibly){%endif%}
{{summary[ftype]["total-data-rows"]}} new
{%if ftype == "phenocovar"%}
phenotypes
{%else%}
{{summary[ftype]["description"]}} rows
{%endif%}
to the database.
</li>
{%endif%}
{%endfor%}
</ul>
<form id="frm-review-phenotype-data"
method="POST"
action="{{url_for('species.populations.phenotypes.load_data_to_database',
species_id=species.SpeciesId,
population_id=population.Id,
dataset_id=dataset.Id)}}">
<input type="hidden" name="data-qc-job-id" value="{{job.jobid}}" />
<input type="submit"
value="continue"
class="btn btn-primary" />
</form>
</div>
{%else%}
<div class="row">
<h4 class="subheading">Invalid Job</h3>
<p class="text-danger">
Could not find a job with the ID: <strong>{{job_id}}.</p>
<p>You will be redirected in
<span id="countdown-element" class="text-info">20</span> second(s)</p>
<p class="text-muted">
<small>
If you are not redirected, please
<a href="{{url_for(
'species.populations.phenotypes.view_dataset',
species_id=species.SpeciesId,
population_id=population.Id,
dataset_id=dataset.Id)}}">click here</a> to continue
</small>
</p>
</div>
{%endif%}
{%endblock%}
{%block sidebarcontents%}
{{display_pheno_dataset_card(species, population, dataset)}}
{%endblock%}
{%block javascript%}
<script type="text/javascript">
$(document).ready(function() {
var countdown = 20;
var countdown_element = $("#countdown-element");
if(countdown_element.length === 1) {
intv = window.setInterval(function() {
countdown = countdown - 1;
countdown_element.html(countdown);
}, 1000);
}
});
</script>
{%endblock%}
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