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{%extends "phenotypes/base.html"%}
{%from "cli-output.html" import cli_output%}
{%from "flash_messages.html" import flash_all_messages%}
{%from "macro-table-pagination.html" import table_pagination%}
{%from "phenotypes/macro-display-pheno-dataset-card.html" import display_pheno_dataset_card%}
{%block extrameta%}
{%if job and job.status not in ("success", "completed:success", "error", "completed:error")%}
<meta http-equiv="refresh" content="5" />
{%endif%}
{%endblock%}
{%block title%}Phenotypes{%endblock%}
{%block pagetitle%}Phenotypes{%endblock%}
{%block lvl4_breadcrumbs%}
<li {%if activelink=="add-phenotypes"%}
class="breadcrumb-item active"
{%else%}
class="breadcrumb-item"
{%endif%}>
<a href="{{url_for('species.populations.phenotypes.add_phenotypes',
species_id=species.SpeciesId,
population_id=population.Id,
dataset_id=dataset.Id)}}">View Datasets</a>
</li>
{%endblock%}
{%block contents%}
{%if job%}
<div class="row">
<p><strong>Status:</strong> {{job.status}}</p>
{%if job.status in ("completed:success", "success")%}
<p><a href="#"
class="not-implemented btn btn-primary"
title="Continue to process data">Continue</a>
</p>
{%endif%}
</div>
<h4 class="subheading">Errors</h4>
<div class="row" style="max-height: 20em; overflow: auto;">
{%if errors | length == 0 %}
<p class="text-info">
<span class="glyphicon glyphicon-info-sign"></span>
No errors found so far
</p>
{%else%}
<table class="table">
<thead>
<tr>
<th>File</th>
<th>Row</th>
<th>Column</th>
<th>Value</th>
<th>Message</th>
</thead>
<tbody>
{%for error in errors%}
<tr>
<td>{{error.filename}}</td>
<td>{{error.rowtitle}}</td>
<td>{{error.coltitle}}</td>
<td>{%if error.cellvalue | length > 25%}
{{error.cellvalue[0:24]}}…
{%else%}
{{error.cellvalue}}
{%endif%}
</td>
<td>{{error.message}}</td>
</tr>
{%endfor%}
</tbody>
</table>
{%endif%}
</div>
<div class="row">
{{cli_output(job, "stdout")}}
</div>
<div class="row">
{{cli_output(job, "stderr")}}
</div>
{%else%}
<div class="row">
<h3 class="text-danger">No Such Job</h3>
<p>Could not find a job with the ID: {{job_id}}</p>
<p>
Please go back to
<a href="{{url_for('species.populations.phenotypes.view_dataset',
species_id=species.SpeciesId,
population_id=population.Id,
dataset_id=dataset.Id)}}"
title="'{{dataset.Name}}' dataset page">
the '{{dataset.Name}}' dataset page</a>
to upload new phenotypes or edit existing ones.</p>
</div>
{%endif%}
{%endblock%}
{%block sidebarcontents%}
{{display_pheno_dataset_card(species, population, dataset)}}
{%endblock%}
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