blob: 8b1642c70c66dcf4643a930d6b409f353e768aa0 (
about) (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
|
{%extends "phenotypes/base.html"%}
{%from "flash_messages.html" import flash_all_messages%}
{%from "populations/macro-display-population-card.html" import display_population_card%}
{%block title%}Phenotypes{%endblock%}
{%block pagetitle%}Phenotypes{%endblock%}
{%block lvl4_breadcrumbs%}
<li {%if activelink=="edit-phenotype"%}
class="breadcrumb-item active"
{%else%}
class="breadcrumb-item"
{%endif%}>
<a href="{{url_for('species.populations.phenotypes.edit_phenotype_data',
species_id=species.SpeciesId,
population_id=population.Id,
dataset_id=dataset.Id,
xref_id=xref_id)}}">View Datasets</a>
</li>
{%endblock%}
{%block contents%}
{{flash_all_messages()}}
<div class="row">
<h2 class="heading">edit phenotype data</h2>
<p>The two (2) forms provided in this page help you update the data for the
phenotypes, and the publication information for the phenotype,
respectively.</p>
</div>
<div class="row">
<h3 class="subheading">phenotype data</h3>
<form id="frm-edit-phenotype-data">
<div style="max-height: 23.37em;overflow-y: scroll;">
<table class="table table-striped table-responsive table-form-table">
<thead style="position: sticky; top: 0;">
<tr>
<th>#</th>
<th>Sample</th>
<th>Value</th>
{%if population.Family in families_with_se_and_n%}
<th>Standard-Error</th>
<th>Number of Samples</th>
{%endif%}
</tr>
</thead>
<tbody>
{%for item in phenotype.data%}
<tr>
<td>{{loop.index}}</td>
<td>{{item.StrainName}}</td>
<td>
<input type="text"
name="value::{{item.DataId}}::{{item.StrainId}}"
value="{{item.value}}"
data-original-value="{{item.value}}"
class="form-control" /></td>
{%if population.Family in families_with_se_and_n%}
<td>
<input type="text"
name="se::{{item.DataId}}::{{item.StrainId}}"
value="{{item.error or ''}}"
data-original-value="{{item.error or ''}}"
class="form-control" /></td>
<td><input type="text"
name="n::{{item.DataId}}::{{item.StrainId}}"
value="{{item.count or ''}}"
data-original-value="{{item.count or "-"}}"
class="form-control" /></td>
{%endif%}
</tr>
{%endfor%}
</tbody>
</table>
</div>
<div class="form-group">
<input type="submit"
name="submit"
class="btn btn-primary not-implemented"
value="update data" />
</div>
</form>
</div>
<div class="row">
<h3 class="subheading">publication information</h3>
<p>Use the form below to update the publication information for this
phenotype.</p>
<form id="frm-edit-phenotype-pub-data"
method="POST"
action="#">
<div class="form-group">
<label for="txt-pubmed-id" class="form-label">Pubmed ID</label>
<input id="txt-pubmed-id" name="pubmed-id" type="text"
class="form-control" />
<span class="form-text text-muted">
Enter your publication's PubMed ID.
</span>
</div>
<div class="form-group">
<label for="txt-publication-authors" class="form-label">Authors</label>
<input id="txt-publication-authors" name="publication-authors"
type="text" class="form-control" />
<span class="form-text text-muted">
Enter the authors.</span>
</div>
<div class="form-group">
<label for="txt-publication-title" class="form-label">
Publication Title</label>
<input id="txt-publication-title" name="publication-title" type="text"
class="form-control" />
<span class="form-text text-muted">
Enter your publication's title.</span>
</div>
<div class="form-group">
<label for="txt-publication-abstract" class="form-label">
Publication Abstract</label>
<textarea id="txt-publication-abstract" name="publication-abstract"
class="form-control" rows="10"></textarea>
<span class="form-text text-muted">
Enter the abstract for your publication.</span>
</div>
<div class="form-group">
<label for="txt-publication-journal" class="form-label">Journal</label>
<input id="txt-publication-journal" name="journal" type="text"
class="form-control" />
<span class="form-text text-muted">
Enter the name of the journal where your work was published.</span>
</div>
<div class="form-group">
<label for="txt-publication-volume" class="form-label">Volume</label>
<input id="txt-publication-volume" name="publication-volume" type="text"
class="form-control" />
<span class="form-text text-muted">
Enter the volume in the following format …</span>
</div>
<div class="form-group">
<label for="txt-publication-pages" class="form-label">Pages</label>
<input id="txt-publication-pages" name="publication-pages" type="text"
class="form-control" />
<span class="form-text text-muted">
Enter the journal volume where your work was published.</span>
</div>
<div class="form-group">
<label for="select-publication-month" class="form-label">
Publication Month</label>
<select id="select-publication-month" name="publication-month"
class="form-control">
{%for month in monthnames%}
<option value="{{month | lower}}"
{%if current_month | lower == month | lower%}
selected="selected"
{%endif%}>{{month | capitalize}}</option>
{%endfor%}
</select>
<span class="form-text text-muted">
Select the month when the work was published.
<span class="text-danger">
This cannot be before, say 1600 and cannot be in the future!</span></span>
</div>
<div class="form-group">
<label for="txt-publication-year" class="form-label">Publication Year</label>
<input id="txt-publication-year" name="publication-year" type="text"
class="form-control" value="{{current_year}}" />
<span class="form-text text-muted">
Enter the year your work was published.
<span class="text-danger">
This cannot be before, say 1600 and cannot be in the future!</span>
</span>
</div>
<div class="form-group">
<input type="submit"
name="submit"
class="btn btn-primary not-implemented"
value="update publication" />
</div>
</form>
</div>
{%endblock%}
{%block sidebarcontents%}
{{display_population_card(species, population)}}
{%endblock%}
|
