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{%extends "phenotypes/add-phenotypes-base.html"%}
{%from "flash_messages.html" import flash_all_messages%}
{%from "macro-table-pagination.html" import table_pagination%}
{%from "phenotypes/macro-display-pheno-dataset-card.html" import display_pheno_dataset_card%}
{%block title%}Phenotypes{%endblock%}
{%block pagetitle%}Phenotypes{%endblock%}
{%block lvl4_breadcrumbs%}
<li {%if activelink=="add-phenotypes"%}
class="breadcrumb-item active"
{%else%}
class="breadcrumb-item"
{%endif%}>
<a href="{{url_for('species.populations.phenotypes.add_phenotypes',
species_id=species.SpeciesId,
population_id=population.Id,
dataset_id=dataset.Id)}}">Add Phenotypes</a>
</li>
{%endblock%}
{%block frm_add_phenotypes_documentation%}
<p>Provide all the files requested below. … document this better …</p>
{%endblock%}
{%block frm_add_phenotypes_elements%}
<fieldset id="fldset-file-metadata">
<legend>File(s) Metadata</legend>
<div class="form-group">
<label for="txt-file-separator" class="form-label">File Separator</label>
<div class="input-group">
<input id="txt-file-separator"
name="file-separator"
type="text"
value="	"
class="form-control"
maxlength="1" />
<span class="input-group-btn">
<button id="btn-reset-file-separator" class="btn btn-info">Reset Default</button>
</span>
</div>
<span class="form-text text-muted">
Provide the character that separates the fields in your file(s). It should
be the same character for all files (if more than one is provided).<br />
A tab character will be assumed if you leave this field blank.</span>
</div>
<div class="form-group">
<label for="txt-file-comment-character" class="form-label">File Comment-Character</label>
<div class="input-group">
<input id="txt-file-comment-character"
name="file-comment-character"
type="text"
value="#"
class="form-control"
maxlength="1" />
<span class="input-group-btn">
<button id="btn-reset-file-comment-character" class="btn btn-info">
Reset Default</button>
</span>
</div>
<span class="form-text text-muted">
This specifies that lines that begin with the character provided will be
considered comment lines and ignored in their entirety.</span>
</div>
<div class="form-group">
<label for="txt-file-na" class="form-label">File "No-Value" Indicators</label>
<div class="input-group">
<input id="txt-file-na"
name="file-na"
type="text"
value="- NA N/A"
class="form-control" />
<span class="input-group-btn">
<button id="btn-reset-file-na" class="btn btn-info">Reset Default</button>
</span>
</div>
<span class="form-text text-muted">
This specifies strings in your file indicate that there is no value for a
particular cell (a cell is where a column and row intersect). Provide a
space-separated list of strings if you have more than one way of
indicating no values.</span>
</div>
</fieldset>
<fieldset id="fldset-data-files">
<legend>Data File(s)</legend>
<div class="form-group">
<label for="finput-phenotype-descriptions" class="form-label">
Phenotype Descriptions</label>
<input id="finput-phenotype-descriptions"
name="phenotype-descriptions"
class="form-control"
type="file"
required="required" />
<span class="form-text text-muted">
Provide a file that contains only the phenotype descriptions,
<a href="#docs-file-phenotype-description"
title="Documentation of the phenotype data file format.">
the documentation for the expected format of the file</a>.</span>
</div>
<div class="form-group">
<label for="finput-phenotype-data" class="form-label">Phenotype Data</label>
<input id="finput-phenotype-data"
name="phenotype-data"
class="form-control"
type="file"
required="required" />
<span class="form-text text-muted">
Provide a file that contains only the phenotype data. See
<a href="#docs-file-example"
title="Documentation of the phenotype data file format.">
the documentation for the expected format of the file</a>.</span>
</div>
{%if population.Family in families_with_se_and_n%}
<div class="form-group">
<label for="finput-phenotype-se" class="form-label">Phenotype: Standard Errors</label>
<input id="finput-phenotype-se"
name="phenotype-se"
class="form-control"
type="file"
required="required" />
<span class="form-text text-muted">
Provide a file that contains only the standard errors for the phenotypes,
computed from the data above.</span>
</div>
<div class="form-group">
<label for="finput-phenotype-n" class="form-label">Phenotype: Number of Samples/Individuals</label>
<input id="finput-phenotype-n"
name="phenotype-n"
class="form-control"
type="file"
required="required" />
<span class="form-text text-muted">
Provide a file that contains only the number of samples/individuals used in
the computation of the standard errors above.</span>
</div>
</fieldset>
{%endif%}
{%endblock%}
{%block page_documentation%}
page documentation goes here!!!
{%block more_javascript%}
<script type="text/javascript">
$("#btn-reset-file-separator").on("click", (event) => {
event.preventDefault();
$("#txt-file-separator").val("\t");
});
$("#btn-reset-file-comment-character").on("click", (event) => {
event.preventDefault();
$("#txt-file-comment-character").val("#");
});
$("#btn-reset-file-na").on("click", (event) => {
event.preventDefault();
$("#txt-file-na").val("- NA N/A");
});
</script>
{%endblock%}
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