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{%extends "phenotypes/base.html"%}
{%from "flash_messages.html" import flash_all_messages%}
{%from "macro-table-pagination.html" import table_pagination%}
{%from "phenotypes/macro-display-pheno-dataset-card.html" import display_pheno_dataset_card%}
{%block title%}Phenotypes{%endblock%}
{%block pagetitle%}Phenotypes{%endblock%}
{%block lvl4_breadcrumbs%}
<li {%if activelink=="add-phenotypes"%}
class="breadcrumb-item active"
{%else%}
class="breadcrumb-item"
{%endif%}>
<a href="{{url_for('species.populations.phenotypes.add_phenotypes',
species_id=species.SpeciesId,
population_id=population.Id,
dataset_id=dataset.Id)}}">Add Phenotypes</a>
</li>
{%endblock%}
{%block contents%}
{{flash_all_messages()}}
<div class="row">
<form id="frm-add-phenotypes"
method="POST"
enctype="multipart/form-data"
action="{{url_for('species.populations.phenotypes.add_phenotypes',
species_id=species.SpeciesId,
population_id=population.Id,
dataset_id=dataset.Id,
use_bundle=use_bundle)}}"
data-resumable-target="{{url_for('files.resumable_upload_post')}}">
<legend>Add New Phenotypes</legend>
<div class="form-text help-block">
{%block frm_add_phenotypes_documentation%}{%endblock%}
<p><strong class="text-warning">This will not update any existing phenotypes!</strong></p>
</div>
{%block frm_add_phenotypes_elements%}{%endblock%}
<div class="checkbox">
<label>
<input id="chk-published" type="checkbox" name="published?" />
These phenotypes are published</label>
</div>
<fieldset id="fldset-publication-info" class="visually-hidden">
<legend>Publication Information</legend>
<div class="form-group">
<label for="txt-pubmed-id" class="form-label">Pubmed ID</label>
<div class="input-group">
<input id="txt-pubmed-id" name="pubmed-id" type="text"
class="form-control" />
<span class="input-group-btn">
<button id="btn-search-pubmed-id" class="btn btn-info">Search</button>
</span>
</div>
<span id="search-pubmed-id-error"
class="form-text text-muted text-danger visually-hidden">
</span><br />
<span class="form-text text-muted">
Enter your publication's PubMed ID above and click "Search" to search
for some (or all) of the publication details requested below.
</span>
</div>
<div class="form-group">
<label for="txt-publication-authors" class="form-label">Authors</label>
<input id="txt-publication-authors" name="publication-authors"
type="text" class="form-control" />
<span class="form-text text-muted">
Enter the authors in the following format …</span>
</div>
<div class="form-group">
<label for="txt-publication-title" class="form-label">
Publication Title</label>
<input id="txt-publication-title" name="publication-title" type="text"
class="form-control" />
<span class="form-text text-muted">
Enter your publication's title.</span>
</div>
<div class="form-group">
<label for="txt-publication-abstract" class="form-label">
Publication Abstract</label>
<textarea id="txt-publication-abstract" name="publication-abstract"
class="form-control" rows="10"></textarea>
<span class="form-text text-muted">
Enter the abstract for your publication.</span>
</div>
<div class="form-group">
<label for="txt-publication-journal" class="form-label">Journal</label>
<input id="txt-publication-journal" name="journal" type="text"
class="form-control" />
<span class="form-text text-muted">
Enter the name of the journal where your work was published.</span>
</div>
<div class="form-group">
<label for="txt-publication-volume" class="form-label">Volume</label>
<input id="txt-publication-volume" name="publication-volume" type="text"
class="form-control" />
<span class="form-text text-muted">
Enter the volume in the following format …</span>
</div>
<div class="form-group">
<label for="txt-publication-pages" class="form-label">Pages</label>
<input id="txt-publication-pages" name="publication-pages" type="text"
class="form-control" />
<span class="form-text text-muted">
Enter the journal volume where your work was published.</span>
</div>
<div class="form-group">
<label for="select-publication-month" class="form-label">
Publication Month</label>
<select id="select-publication-month" name="publication-month"
class="form-control">
{%for month in monthnames%}
<option value="{{month | lower}}"
{%if current_month | lower == month | lower%}
selected="selected"
{%endif%}>{{month | capitalize}}</option>
{%endfor%}
</select>
<span class="form-text text-muted">
Select the month when the work was published.
<span class="text-danger">
This cannot be before, say 1600 and cannot be in the future!</span></span>
</div>
<div class="form-group">
<label for="txt-publication-year" class="form-label">Publication Year</label>
<input id="txt-publication-year" name="publication-year" type="text"
class="form-control" value="{{current_year}}" />
<span class="form-text text-muted">
Enter the year your work was published.
<span class="text-danger">
This cannot be before, say 1600 and cannot be in the future!</span>
</span>
</div>
</fieldset>
<div class="form-group">
<input type="submit"
value="upload phenotypes"
class="btn btn-primary" />
</div>
</form>
</div>
<div class="row">
{%block page_documentation%}{%endblock%}
</div>
{%endblock%}
{%block javascript%}
<script type="text/javascript">
$("#chk-published").on("click", (event) => {
pub_details = $("#fldset-publication-info")
if(event.target.checked) {
// display the publication details
remove_class(pub_details, "visually-hidden");
} else {
// hide the publication details
add_class(pub_details, "visually-hidden");
}
});
</script>
{%block more_javascript%}{%endblock%}
{%endblock%}
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