blob: 9198b443bd7a3444f3fc39bf571af78fec43a036 (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
|
{%extends "genotypes/base.html"%}
{%from "flash_messages.html" import flash_all_messages%}
{%from "species/macro-display-species-card.html" import display_species_card%}
{%block title%}Genotypes: List Markers{%endblock%}
{%block pagetitle%}Genotypes: List Markers{%endblock%}
{%block lvl4_breadcrumbs%}
<li {%if activelink=="list-markers"%}
class="breadcrumb-item active"
{%else%}
class="breadcrumb-item"
{%endif%}>
<a href="{{url_for('species.populations.genotypes.list_markers',
species_id=species.SpeciesId)}}">List markers</a>
</li>
{%endblock%}
{%block contents%}
{{flash_all_messages()}}
{%if markers | length > 0%}
<div class="row">
<p>
There are a total of {{total_markers}} genotype markers for this species.
</p>
<div class="row">
<div class="col-md-2" style="text-align: start;">
{%if start_from > 0%}
<a href="{{url_for('species.populations.genotypes.list_markers',
species_id=species.SpeciesId,
start_from=start_from-count,
count=count)}}">
<span class="glyphicon glyphicon-backward"></span>
Previous
</a>
{%endif%}
</div>
<div class="col-md-8" style="text-align: center;">
Displaying markers {{start_from+1}} to {{start_from+count if start_from+count < total_markers else total_markers}} of
{{total_markers}}
</div>
<div class="col-md-2" style="text-align: end;">
{%if start_from + count < total_markers%}
<a href="{{url_for('species.populations.genotypes.list_markers',
species_id=species.SpeciesId,
start_from=start_from+count,
count=count)}}">
Next
<span class="glyphicon glyphicon-forward"></span>
</a>
{%endif%}
</div>
</div>
<table class="table">
<thead>
<tr>
<th title="">#</th>
<th title="">Marker Name</th>
<th title="Chromosome">Chr</th>
<th title="Physical location of the marker in megabasepairs">
Location (Mb)</th>
<th title="">Source</th>
<th title="">Source2</th>
</thead>
<tbody>
{%for marker in markers%}
<tr>
<td>{{marker.sequence_number}}</td>
<td>{{marker.Marker_Name}}</td>
<td>{{marker.Chr}}</td>
<td>{{marker.Mb}}</td>
<td>{{marker.Source}}</td>
<td>{{marker.Source2}}</td>
</tr>
{%endfor%}
</tbody>
</table>
</div>
{%else%}
<div class="row">
<p class="text-warning">
<span class="glyphicon glyphicon-exclamation-sign"></span>
This species does not currently have any genetic markers uploaded, therefore,
there is nothing to display here.
</p>
<p>
<a href="#add-genetic-markers-for-species-{{species.SpeciesId}}"
title="Add genetic markers for this species"
class="btn btn-primary">
add genetic markers
</a>
</p>
</div>
{%endif%}
{%endblock%}
{%block sidebarcontents%}
{{display_species_card(species)}}
{%endblock%}
|
