blob: 89da06cb31e5c424f8551df19793c5e4ba336d33 (
about) (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
|
"""Module to handle persistence and retrieval of publication to/from MariaDB"""
def fetch_phenotype_publications(
conn, ids: tuple[tuple[int, int], ...]) -> tuple[dict, ...]:
"""Fetch publication from database by ID."""
paramstr = ",".join(["(%s, %s)"] * len(ids))
query = (
"SELECT "
"pxr.PhenotypeId, pxr.Id AS xref_id, pxr.PublicationId, pub.PubMed_ID "
"FROM PublishXRef AS pxr INNER JOIN Publication AS pub "
"ON pxr.PublicationId=pub.Id "
f"WHERE (pxr.PhenotypeId, pxr.Id) IN ({paramstr})")
with conn.cursor(cursorclass=DictCursor) as cursor:
cursor.execute(query, tuple(item for row in ids for item in row))
return tuple(dict(row) for row in cursor.fetchall())
|