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"""Handle db interactions for platforms."""
from typing import Optional
import MySQLdb as mdb
from MySQLdb.cursors import DictCursor
def platforms_by_species(
conn: mdb.Connection,
speciesid: int,
offset: int = 0,
limit: Optional[int] = None
) -> tuple[dict, ...]:
"""Retrieve platforms by the species"""
_query = ("SELECT * FROM GeneChip WHERE SpeciesId=%s "
"ORDER BY GeneChipName ASC")
if bool(limit) and limit > 0:# type: ignore[operator]
_query = f"{_query} LIMIT {limit} OFFSET {offset}"
with conn.cursor(cursorclass=DictCursor) as cursor:
cursor.execute(_query, (speciesid,))
return tuple(dict(row) for row in cursor.fetchall())
def species_platforms_count(conn: mdb.Connection, species_id: int) -> int:
"""Get the number of platforms in the database for a particular species."""
with conn.cursor(cursorclass=DictCursor) as cursor:
cursor.execute(
"SELECT COUNT(GeneChipName) AS count FROM GeneChip "
"WHERE SpeciesId=%s",
(species_id,))
return int(cursor.fetchone()["count"])
def platform_by_id(conn: mdb.Connection, platformid: int) -> Optional[dict]:
"""Retrieve a platform by its ID"""
with conn.cursor(cursorclass=DictCursor) as cursor:
cursor.execute("SELECT * FROM GeneChip WHERE Id=%s",
(platformid,))
result = cursor.fetchone()
if bool(result):
return dict(result)
return None
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