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"""Miscellaneous functions handling phenotypes and phenotypes data."""
import logging
logger = logging.getLogger(__name__)
def phenotypes_data_differences(
filedata: tuple[dict, ...], dbdata: tuple[dict, ...]
) -> tuple[dict, ...]:
"""Compute differences between file data and db data"""
diff = tuple()
for filerow, dbrow in zip(
sorted(filedata, key=lambda item: (item["phenotype_id"], item["xref_id"])),
sorted(dbdata, key=lambda item: (item["PhenotypeId"], item["xref_id"]))):
for samplename, value in filerow["data"].items():
if value != dbrow["data"].get(samplename, {}).get("value"):
diff = diff + ({
"PhenotypeId": filerow["phenotype_id"],
"xref_id": filerow["xref_id"],
"DataId": dbrow["DataId"],
"StrainId": dbrow["data"].get(samplename, {}).get("StrainId"),
"StrainName": samplename,
"value": value
},)
return diff
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