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"""Basic routes required for all pages"""
import os
import logging
from urllib.parse import urljoin
from gn_libs.mysqldb import database_connection
from flask import (flash,
request,
url_for,
redirect,
Blueprint,
current_app as app,
send_from_directory)
from uploader.ui import make_template_renderer
from uploader.oauth2.client import user_logged_in
from uploader.species.models import all_species, species_by_id
base = Blueprint("base", __name__)
logger = logging.getLogger(__name__)
render_template = make_template_renderer("home")
@base.route("/favicon.ico", methods=["GET"])
def favicon():
"""Return the favicon."""
return send_from_directory(os.path.join(app.root_path, "static"),
"images/CITGLogo.png",
mimetype="image/png")
@base.route("/", methods=["GET"])
def index():
"""Load the landing page"""
streamlined_ui = request.args.get("streamlined_ui")
if not bool(streamlined_ui):# TODO: Remove this section
return render_template(
"index.html" if user_logged_in() else "login.html",
gn2server_intro=urljoin(app.config["GN2_SERVER_URL"], "/intro"))
with database_connection(app.config["SQL_URI"]) as conn:
print("We found a species ID. Processing...")
if not bool(request.args.get("species_id")):
return render_template(
"sui-index.html",# TODO: Rename: sui-index.html, sui_base.html
gn2server_intro=urljoin(app.config["GN2_SERVER_URL"], "/intro"),
species=all_species(conn),
streamlined_ui=streamlined_ui)
species = species_by_id(conn, request.args.get("species_id"))
if not bool(species):
flash("Selected species was not found!", "alert alert-danger")
return redirect(url_for("base.index", streamlined_ui=streamlined_ui))
return redirect(url_for("species.view_species",
species_id=species["SpeciesId"],
streamlined_ui=streamlined_ui))
def appenv():
"""Get app's guix environment path."""
return os.environ.get("GN_UPLOADER_ENVIRONMENT")
@base.route("/bootstrap/<path:filename>")
def bootstrap(filename):
"""Fetch bootstrap files."""
return send_from_directory(appenv(), f"share/web/bootstrap/{filename}")
@base.route("/jquery/<path:filename>")
def jquery(filename):
"""Fetch jquery files."""
return send_from_directory(
appenv(), f"share/genenetwork2/javascript/jquery/{filename}")
@base.route("/datatables/<path:filename>")
def datatables(filename):
"""Fetch DataTables files."""
return send_from_directory(
appenv(), f"share/genenetwork2/javascript/DataTables/{filename}")
@base.route("/datatables-extensions/<path:filename>")
def datatables_extensions(filename):
"""Fetch DataTables files."""
return send_from_directory(
appenv(), f"share/genenetwork2/javascript/DataTablesExtensions/{filename}")
@base.route("/node-modules/<path:filename>")
def node_modules(filename):
"""Fetch node-js modules."""
return send_from_directory(
appenv(), f"lib/node_modules/{filename}")
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