1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
|
"""Test accessing nonexistent member."""
from pathlib import Path
import pytest
from zipfile import ZipFile
from r_qtl import r_qtl2 as rqtl2
@pytest.mark.unit_test
@pytest.mark.parametrize(
"filepath,memberkey",
(("tests/r_qtl/test_files/nonexistent.zip", "geno"),
("tests/r_qtl/test_files/nonexistent.zip", "founder_geno"),
("tests/r_qtl/test_files/nonexistent.zip", "pheno"),
("tests/r_qtl/test_files/nonexistent.zip", "covar"),
("tests/r_qtl/test_files/nonexistent.zip", "phenocovar"),
("tests/r_qtl/test_files/nonexistent.zip", "gmap"),
("tests/r_qtl/test_files/nonexistent.zip", "pmap")))
def test_loading_nonexistent_file(filepath, memberkey):
"""
GIVEN: A zipfile with a valid control file, but some files mentioned in the
control file do not exist in the zipfile
WHEN: access is made to such missing files
THEN: raise an exception
"""
with (ZipFile(Path(filepath).absolute(), "r") as zfile,
pytest.raises(rqtl2.InvalidFormat)):
cdata = rqtl2.control_data(zfile)
tuple(rqtl2.file_data(zfile, memberkey, cdata))
|
