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{%extends "base.html"%}
{%from "flash_messages.html" import flash_all_messages%}
{%from "upload_progress_indicator.html" import upload_progress_indicator%}
{%block title%}Upload R/qtl2 Bundle{%endblock%}
{%block contents%}
{{upload_progress_indicator()}}
<h2 class="heading">Upload R/qtl2 Bundle</h2>
<form id="frm-upload-rqtl2-bundle"
action="{{url_for('upload.rqtl2.upload_rqtl2_bundle',
species_id=species.SpeciesId,
population_id=population.InbredSetId)}}"
method="POST"
enctype="multipart/form-data">
<input type="hidden" name="species_id" value="{{species.SpeciesId}}" />
<input type="hidden" name="population_id"
value="{{population.InbredSetId}}" />
{{flash_all_messages()}}
<div form-group>
<legend class="heading">file upload</legend>
<label for="file-rqtl2-bundle" class="form-label">R/qtl2 bundle</label>
<input type="file" id="file-rqtl2-bundle" name="rqtl2_bundle_file"
accept="application/zip, .zip"
required="required"
class="form-control" />
<span class="form-text text-muted"><p>Provide a valid R/qtl2 zip file here. In
particular, ensure your zip bundle contains exactly one control file and
the corresponding files mentioned in the control file.</p>
<p>The control file can be either a YAML or JSON file. <em>ALL</em> other
data files in the zip bundle should be CSV files.</p>
<p>See the
<a href="https://kbroman.org/qtl2/assets/vignettes/input_files.html"
target="_blank">
R/qtl2 file format specifications</a> for more details.</p></span>
</div>
<button type="submit"
class="btn btn-primary"
data-toggle="modal"
data-target="#upload-progress-indicator">upload R/qtl2 bundle</button>
</form>
{%endblock%}
{%block javascript%}
<script type="text/javascript" src="/static/js/upload_progress.js"></script>
<script type="text/javascript">
setup_upload_handlers(
"frm-upload-rqtl2-bundle", make_data_uploader(
function (form) {
var formdata = new FormData();
formdata.append(
"species_id",
form.querySelector('input[name="species_id"]').value);
formdata.append(
"population_id",
form.querySelector('input[name="population_id"]').value);
formdata.append(
"rqtl2_bundle_file",
form.querySelector("#file-rqtl2-bundle").files[0]);
return formdata;
}));
</script>
{%endblock%}
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