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"""Handle jobs"""
import os
import sys
import shlex
import subprocess
from uuid import uuid4
from datetime import timedelta
from redis import Redis
from flask import current_app as app
def error_filename(job_id, error_dir):
"Compute the path of the file where errors will be dumped."
return f"{error_dir}/job_{job_id}.error"
def __init_job__(# pylint: disable=[too-many-arguments]
redis_conn: Redis, job_id: str, command: list, job_type: str,
ttl_seconds: int, extra_meta: dict) -> dict:
"Initialise a job 'object' and put in on redis"
the_job = {
"job_id": job_id, "command": shlex.join(command), "status": "pending",
"percent": 0, "job-type": job_type, **extra_meta
}
redis_conn.hset(name=the_job["job_id"], mapping=the_job)
redis_conn.expire(name=the_job["job_id"], time=timedelta(seconds=ttl_seconds))
return the_job
def build_file_verification_job(
redis_conn: Redis, filepath: str, filetype: str, redisurl: str,
ttl_seconds: int):
"Build a file verification job"
job_id = str(uuid4())
command = [
sys.executable, "-m", "scripts.validate_file", filetype, filepath, redisurl,
job_id
]
return __init_job__(
redis_conn, job_id, command, "file-verification", ttl_seconds, {
"filetype": filetype,
"filename": os.path.basename(filepath), "percent": 0
})
def data_insertion_job(# pylint: disable=[too-many-arguments]
redis_conn: Redis, filepath: str, filetype: str, totallines: int,
speciesid: int, platformid: int, datasetid: int, databaseuri: str,
redisuri: str, ttl_seconds: int) -> dict:
"Build a data insertion job"
command = [
sys.executable, "-m", "scripts.insert_data", filetype, filepath,
speciesid, platformid, datasetid, databaseuri, redisuri
]
return __init_job__(
redis_conn, str(uuid4()), command, "data-insertion", ttl_seconds, {
"filename": os.path.basename(filepath), "filetype": filetype,
"totallines": totallines
})
def launch_job(the_job: dict, redisurl: str, error_dir):
"""Launch a job in the background"""
if not os.path.exists(error_dir):
os.mkdir(error_dir)
job_id = the_job["job_id"]
with open(error_filename(job_id, error_dir),
"w",
encoding="utf-8") as errorfile:
subprocess.Popen( # pylint: disable=[consider-using-with]
[sys.executable, "-m", "scripts.worker", redisurl, job_id],
stderr=errorfile,
env={"PYTHONPATH": ":".join(sys.path)})
return the_job
def job(redis_conn, job_id: str):
"Retrieve the job"
return redis_conn.hgetall(job_id)
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