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(use-modules (git oid)
(guix gexp)
(git bindings)
(git reference)
(git repository)
(guix packages)
(guix git-download)
(gnu packages check)
(gnu packages databases)
(gnu packages python-xyz)
(gnu packages python-web)
(guix build-system python)
(gnu packages python-check)
((guix licenses) #:prefix license:))
(define %source-dir (dirname (current-filename)))
(libgit2-init!)
(define gnqc-py
(let ((commit (oid->string
(reference-target
(repository-head (repository-open %source-dir)))))
(revision "3"))
(package
(name "genenetwork-qc")
(version (git-version "0.0.1" revision commit))
(source (local-file %source-dir
"gnqc_py-checkout"
#:recursive? #t
#:select? (git-predicate %source-dir)))
(build-system python-build-system)
(arguments
`(#:tests? #f ; Cannot start redis during `guix build'
#:phases
(modify-phases %standard-phases
(replace 'check
(lambda* (#:key tests? #:allow-other-keys)
(when tests?
(invoke "pytest")))))))
(inputs
(list python-mypy
python-pylint
python-pytest
python-hypothesis))
(propagated-inputs
(list redis
mariadb
gunicorn
python-redis
python-flask
python-pyyaml
python-jsonpickle
python-mysqlclient))
(synopsis "GeneNetwork Quality Control Application")
(description
"GeneNetwork qc is a quality control application for the data files that
eventually are used to add to the data in the GeneNetwork project.")
(home-page "https://git.genenetwork.org/fredmanglis/gnqc_py")
(license license:agpl3+))))
(libgit2-shutdown!)
gnqc-py
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