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(define-module (gnqc-py)
#:use-module (guix gexp)
#:use-module (guix utils)
#:use-module (guix packages)
#:use-module (guix git-download)
#:use-module ((gnu packages check) #:select (python-pylint))
#:use-module ((gnu packages python-check) #:select (python-mypy))
#:use-module ((gn packages genenetwork) #:select (gnqc-py) #:prefix gn:))
(define %source-dir (dirname (dirname (current-source-directory))))
(define vcs-file?
(or (git-predicate %source-dir)
(const #t)))
(define-public gn-uploader
(package
(inherit gn:gn-uploader)
(source
(local-file "../.."
"gn-uploader-checkout"
#:recursive? #t
#:select? vcs-file?))))
(define-public gn-uploader-all-tests
(package
(inherit gn-uploader)
(arguments
(substitute-keyword-arguments (package-arguments gn-uploader)
((#:phases #~%standard-phases)
#~(modify-phases #$phases
(add-before 'build 'pylint
(lambda _
(invoke "pylint" "setup.py" "wsgi.py" "tests" "quality_control"
"qc_app" "r_qtl" "scripts")))
(add-after 'pylint 'mypy
(lambda _
(invoke "mypy" ".")))))))
(native-inputs
(modify-inputs (package-native-inputs gn-uploader)
(prepend python-mypy)
(prepend python-pylint)))))
gn-uploader
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