blob: 848b29de19402f2efe9b37f2aea0fc9a21047d96 (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
|
(define-module (gnqc-py)
#:use-module (guix gexp)
#:use-module (guix utils)
#:use-module (guix packages)
#:use-module (guix git-download)
#:use-module ((gnu packages check) #:select (python-pylint))
#:use-module ((gnu packages python-check) #:select (python-mypy))
#:use-module ((gn packages genenetwork) #:select (gnqc-py) #:prefix gn:))
(define %source-dir (dirname (dirname (current-source-directory))))
(define vcs-file?
(or (git-predicate %source-dir)
(const #t)))
(define-public gnqc-py
(package
(inherit gn:gnqc-py)
(source
(local-file "../.."
"gnqc-py-checkout"
#:recursive? #t
#:select? vcs-file?))))
(define-public gnqc-py-all-tests
(package
(inherit gnqc-py)
(arguments
(substitute-keyword-arguments (package-arguments gnqc-py)
((#:phases #~%standard-phases)
#~(modify-phases #$phases
(add-before 'build 'pylint
(lambda _
(invoke "pylint" "setup.py" "wsgi.py" "tests" "quality_control"
"qc_app" "r_qtl" "scripts")))
(add-after 'pylint 'mypy
(lambda _
(invoke "mypy" ".")))))))
(native-inputs
(modify-inputs (package-native-inputs gnqc-py)
(prepend python-mypy)
(prepend python-pylint)))))
gnqc-py
|
