| Age | Commit message (Expand) | Author |
|---|
| 2025-06-10 | On success, redirect to job status check page. | Frederick Muriuki Muriithi |
| 2025-06-10 | Display the error. | Frederick Muriuki Muriithi |
| 2025-06-10 | Set loglevel for background job's launcher. | Frederick Muriuki Muriithi |
| 2025-06-05 | Request token for use with script to update authorisations•••After the script has completed loading the data into the database, the
user who uploads the data will need to access the data they've
uploaded.
This commit requests a new token to use with the script for updating
the authorisations as appropriate, to grant the user access to their
data.
| Frederick Muriuki Muriithi |
| 2025-06-03 | Save data with `LOAD DATA INFILE …` query•••To help speed up the saving of the data (for really huge files) into
the database, use the `LOAD DATA INFILE …` command if available, and
if not fallback to the one using raw queries.
| Frederick Muriuki Muriithi |
| 2025-06-03 | Increase number of rows per query. | Frederick Muriuki Muriithi |
| 2025-06-03 | Debug the query: useful to figure out what's happening. | Frederick Muriuki Muriithi |
| 2025-06-03 | Memory saving: Don't reload saved data•••We already have all the data in memory, so we do not need to reload it
and keep yet another copy.
| Frederick Muriuki Muriithi |
| 2025-06-02 | Add some debugging statements. | Frederick Muriuki Muriithi |
| 2025-06-02 | Parametrize the "DataId" column for different tables. | Frederick Muriuki Muriithi |
| 2025-06-02 | Explicitly query for newly entered data.•••The `cursor.executemany()` call only returned the last row that was
inserted, rather than ALL the rows. This is not the correct thing to
do, therefore, this commit fixes that by explicitly querying for all
the newly entered data.
| Frederick Muriuki Muriithi |
| 2025-05-30 | Add dataset_id and bundle path to job metadata. | Frederick Muriuki Muriithi |
| 2025-05-30 | Fix typo: Fix table name. | Frederick Muriuki Muriithi |
| 2025-05-30 | Bug: Loop until the data is exhausted. | Frederick Muriuki Muriithi |
| 2025-05-30 | Fix typo, and bug. | Frederick Muriuki Muriithi |
| 2025-05-30 | Fix indentation. | Frederick Muriuki Muriithi |
| 2025-05-30 | Use full table names rather than aliases•••Using aliases leads to errors when you have to use table locking to
prevent data corruption. This commit updates queries to use the full
table names rather than aliases, in order to prevent such troubles.
| Frederick Muriuki Muriithi |
| 2025-05-28 | Add javascript debugging function. | Frederick Muriuki Muriithi |
| 2025-05-19 | Handle case where the given publication_id does not exist. | Frederick Muriuki Muriithi |
| 2025-05-19 | Provide extra metadata to the job. | Frederick Muriuki Muriithi |
| 2025-05-19 | Provide missing URI to the MariaDB database to the script. | Frederick Muriuki Muriithi |
| 2025-05-19 | Add function to save the numerical data for phenotypes. | Frederick Muriuki Muriithi |
| 2025-05-19 | Setup log format for the application. | Frederick Muriuki Muriithi |
| 2025-05-12 | Use builtin functions to compute log level. | Frederick Muriuki Muriithi |
| 2025-05-12 | Break "merge file" race-condition•••Multiple requests/threads were attempting to merge the same file,
leading to race conditions, and sometimes, rarely, it would lead to
actual data corruption.
| Frederick Muriuki Muriithi |
| 2025-05-12 | BugFix: Don't scroll to top of page on clicking "Browse" buttons.•••This fixes the behaviour where clicking the "Browse" buttons on any of
the resumable elements, the viewport would scroll to the top of the page.
| Frederick Muriuki Muriithi |
| 2025-05-09 | Use more of the screen width for content on smaller screens.•••Display only the links and main content on screens smaller than 20 CSS
inches — the idea is that laptop screens and smaller will only display
the links and the main content, leaving the sidebar content hidden.
| Frederick Muriuki Muriithi |
| 2025-05-05 | Init setup and script for async job to load phenotypes into database | Frederick Muriuki Muriithi |
| 2025-05-05 | Save/Create new phenotypes in the database. | Frederick Muriuki Muriithi |
| 2025-05-05 | Provide endpoint for loading data after QC is successful. | Frederick Muriuki Muriithi |
| 2025-05-05 | Require that the publication is present. | Frederick Muriuki Muriithi |
| 2025-05-05 | Move previews below each item rather than being in the sidebar. | Frederick Muriuki Muriithi |
| 2025-05-05 | Include the publication when provided. | Frederick Muriuki Muriithi |
| 2025-05-05 | Allow plain text files too. | Frederick Muriuki Muriithi |
| 2025-05-02 | PoC: Use independent module-level loggers with application•••Using flask.current_app.logger for logging in modules leads to the
modules requiring an app context, even when the module itself could be
used outside of the application.
This commit provides a proof-of-concept (really, me finally putting in
the effort to figure out logging) for how we could allow independent
loggers at the module level, that can then be hooked up to the main
logging in the system in question.
| Frederick Muriuki Muriithi |
| 2025-05-02 | Format abstracts a little better. | Frederick Muriuki Muriithi |
| 2025-04-28 | Provide correct redirection uri, and data. | Frederick Muriuki Muriithi |
| 2025-04-28 | Encode data to UTF-8 to prevent persistence errors. | Frederick Muriuki Muriithi |
| 2025-04-28 | Search for radio was slow for some reason. | Frederick Muriuki Muriithi |
| 2025-04-28 | Allow selection from existing publications. | Frederick Muriuki Muriithi |
| 2025-04-28 | Do not auto-update publication details on conflict•••Auto-update of a publication's details on an "insert conflict" would
lead to a bug where publications could be overwritten with the wrong
information. Rather than auto-update, explicitly indicate the error,
and let the user manually edit the record to avoid data inconsistency.
| Frederick Muriuki Muriithi |
| 2025-04-28 | Implement creating publications. | Frederick Muriuki Muriithi |
| 2025-04-28 | Add logging.•••Without this logging statement, the chunk merging fails with an error
that it cannot find one of the chunks when attempting to delete
it. That error disappears as soon as I attempt to log out the error
and debug.
| Frederick Muriuki Muriithi |
| 2025-04-28 | Enable autofill of information from PubMed. | Frederick Muriuki Muriithi |
| 2025-04-28 | Move functions to fetch pubmed data out into a separate js file. | Frederick Muriuki Muriithi |
| 2025-04-28 | Move generic utility functions to the utils.js file. | Frederick Muriuki Muriithi |
| 2025-04-28 | Provide UI for publication creation. | Frederick Muriuki Muriithi |
| 2025-04-28 | Mark unimplemented features. | Frederick Muriuki Muriithi |
| 2025-04-28 | Provide tooltip text. | Frederick Muriuki Muriithi |
| 2025-04-28 | Display logged in user's email. | Frederick Muriuki Muriithi |
