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AgeCommit message (Expand)Author
2025-05-12Use builtin functions to compute log level.Frederick Muriuki Muriithi
2025-05-05Init setup and script for async job to load phenotypes into databaseFrederick Muriuki Muriithi
2025-05-05Save/Create new phenotypes in the database.Frederick Muriuki Muriithi
2025-05-05Provide endpoint for loading data after QC is successful.Frederick Muriuki Muriithi
2025-05-05Include the publication when provided.Frederick Muriuki Muriithi
2025-04-21Proceed to jobs status update page.Frederick Muriuki Muriithi
2025-04-21Use module-specific logger.Frederick Muriuki Muriithi
2025-04-21Add "DataId" to top-level trait details.•••The `DataId` is unique in the `PublishXRef` table. Frederick Muriuki Muriithi
2025-04-14Fix typo.Frederick Muriuki Muriithi
2025-04-14Move common fieldnames into exportable variable.Frederick Muriuki Muriithi
2025-04-14Implement difference computations.Frederick Muriuki Muriithi
2025-04-14Add tests for new difference computation function.Frederick Muriuki Muriithi
2025-04-14Log out job command for easier debug.Frederick Muriuki Muriithi
2025-04-14Provide species, population and dataset identifiers as job metadata.Frederick Muriuki Muriithi
2025-03-26Pass in system log-level to script.Frederick Muriuki Muriithi
2025-03-26Provide connection URI for mariadb.Frederick Muriuki Muriithi
2025-03-26Update comment text.Frederick Muriuki Muriithi
2025-03-25Run job with unbuffered outputs.Frederick Muriuki Muriithi
2025-03-25Update name of launcher script used.Frederick Muriuki Muriithi
2025-03-24Begin processing the uploadeded bulk-edit file.Frederick Muriuki Muriithi
2025-03-21Add "PubMed_ID" field•••The "PubMed_ID" field allows the user to edit the publication that's attached to each phenotype trait. Frederick Muriuki Muriithi
2025-03-21Bulk Edit: Initialise the bulk-edit upload•••* Provide UI for uploading the file * Provide (partially implemented) endpoint to handle the uploaded file. Frederick Muriuki Muriithi
2025-03-21Rename endpoint: Distinguish edit download from other downloads.Frederick Muriuki Muriithi
2025-03-18Enable downloading of dataset's phenotype's data.Frederick Muriuki Muriithi
2025-03-17Include InbredSetId: Useful for querying data.Frederick Muriuki Muriithi
2025-02-18Extract common pattern into generic function.Frederick Muriuki Muriithi
2025-02-18Enable creating new populations on the "Phenotype Data" path.•••Enable creating new populations in the case where the population a user wants to use does not exist in the database. Frederick Muriuki Muriithi
2025-02-18Redirect to "Create Species" page if user selects it.•••Add the "Create Species" sub-step to the phenotype data path. Frederick Muriuki Muriithi
2025-02-18Select from searchable list and allow new species creation.•••Select the species to use from a searchable list. In case the species does not exist in the list, allow creation of the list. Frederick Muriuki Muriithi
2025-01-29Fetch all phenotypes for display with DataTables.Frederick Muriuki Muriithi
2025-01-29Update field name.•••Use "xref_id" rather than "pxr.Id" since the former is a little clearer. Frederick Muriuki Muriithi
2025-01-28Use a more robust check for emptiness.•••Some of the values could be integer values. Frederick Muriuki Muriithi
2025-01-28Fix type-checking issues.Frederick Muriuki Muriithi
2025-01-28Fix linting issues.Frederick Muriuki Muriithi
2025-01-28Update endpoint: Make it more consistent.Frederick Muriuki Muriithi
2025-01-27Show SE and N field if even one row has SE.Frederick Muriuki Muriithi
2025-01-27Fix bug in how the SE and N values for a phenotype are fetched.Frederick Muriuki Muriithi
2025-01-27Enable editing of a phenotype's numeric values.Frederick Muriuki Muriithi
2025-01-27Fix minor bug.Frederick Muriuki Muriithi
2025-01-27Implement editing of basic phenotype metadata.Frederick Muriuki Muriithi
2025-01-25Add function to retrieve a phenotype's publication data.Frederick Muriuki Muriithi
2025-01-25Add the "StrainId" field to phenotype data rows.Frederick Muriuki Muriithi
2025-01-24Provide UI for editing a specific phenotype.Frederick Muriuki Muriithi
2025-01-24Extract reusable constant.Frederick Muriuki Muriithi
2025-01-23Add publication data to page.Frederick Muriuki Muriithi
2025-01-23Only present SE and N columns if at least one row has them.Frederick Muriuki Muriithi
2025-01-23Provide summary for review before entering data to database.Frederick Muriuki Muriithi
2025-01-21Use sanitised names derived from original names.Frederick Muriuki Muriithi
2025-01-21Reuse common job-creation code.Frederick Muriuki Muriithi
2025-01-21Process form contents into a zip bundle.Frederick Muriuki Muriithi