| Age | Commit message (Expand) | Author |
|---|---|---|
| 11 days | Deactivate linter error check.HEADmain | Frederick Muriuki Muriithi |
| 11 days | Remove comments and demo statements. | Frederick Muriuki Muriithi |
| 11 days | Fix linting issues. | Frederick Muriuki Muriithi |
| 11 days | Fix imports•••Remove unused imports, update old imports to newer forms and add missing imports. | Frederick Muriuki Muriithi |
| 11 days | Refactor out common functionality into separate function. | Frederick Muriuki Muriithi |
| 2025-07-01 | Bugfix: The value needs to be a tuple or list. | Frederick Muriuki Muriithi |
| 2025-07-01 | Ignore any optional files that are not provided. | Frederick Muriuki Muriithi |
| 2025-07-01 | Remove unused feature•••The feature is implemented elsewhere (GN2) in a better way. | Frederick Muriuki Muriithi |
| 2025-06-30 | Allow independent transposition of each file•••* Rework UI to provide independent selection of whether or not each file is transposed * Update the backend code to individually set the transposition status for each file independently. | Frederick Muriuki Muriithi |
| 2025-06-26 | Narrow search to only uploaded traits. | Frederick Muriuki Muriithi |
| 2025-06-24 | Use pathlib.Path object for file paths. | Frederick Muriuki Muriithi |
| 2025-06-17 | Allow users to provide transposed files. | Frederick Muriuki Muriithi |
| 2025-06-10 | Display the success page. | Frederick Muriuki Muriithi |
| 2025-06-10 | Pass on the publication to the next job. | Frederick Muriuki Muriithi |
| 2025-06-10 | Provide handler for `load-new-phenotypes-data` jobs. | Frederick Muriuki Muriithi |
| 2025-06-10 | On success, redirect to job status check page. | Frederick Muriuki Muriithi |
| 2025-06-10 | Display the error. | Frederick Muriuki Muriithi |
| 2025-06-10 | Set loglevel for background job's launcher. | Frederick Muriuki Muriithi |
| 2025-06-05 | Request token for use with script to update authorisations•••After the script has completed loading the data into the database, the user who uploads the data will need to access the data they've uploaded. This commit requests a new token to use with the script for updating the authorisations as appropriate, to grant the user access to their data. | Frederick Muriuki Muriithi |
| 2025-05-30 | Add dataset_id and bundle path to job metadata. | Frederick Muriuki Muriithi |
| 2025-05-19 | Provide extra metadata to the job. | Frederick Muriuki Muriithi |
| 2025-05-19 | Provide missing URI to the MariaDB database to the script. | Frederick Muriuki Muriithi |
| 2025-05-12 | Use builtin functions to compute log level. | Frederick Muriuki Muriithi |
| 2025-05-05 | Init setup and script for async job to load phenotypes into database | Frederick Muriuki Muriithi |
| 2025-05-05 | Provide endpoint for loading data after QC is successful. | Frederick Muriuki Muriithi |
| 2025-05-05 | Include the publication when provided. | Frederick Muriuki Muriithi |
| 2025-04-21 | Proceed to jobs status update page. | Frederick Muriuki Muriithi |
| 2025-04-14 | Fix typo. | Frederick Muriuki Muriithi |
| 2025-04-14 | Move common fieldnames into exportable variable. | Frederick Muriuki Muriithi |
| 2025-04-14 | Log out job command for easier debug. | Frederick Muriuki Muriithi |
| 2025-04-14 | Provide species, population and dataset identifiers as job metadata. | Frederick Muriuki Muriithi |
| 2025-03-26 | Pass in system log-level to script. | Frederick Muriuki Muriithi |
| 2025-03-26 | Provide connection URI for mariadb. | Frederick Muriuki Muriithi |
| 2025-03-26 | Update comment text. | Frederick Muriuki Muriithi |
| 2025-03-25 | Run job with unbuffered outputs. | Frederick Muriuki Muriithi |
| 2025-03-25 | Update name of launcher script used. | Frederick Muriuki Muriithi |
| 2025-03-24 | Begin processing the uploadeded bulk-edit file. | Frederick Muriuki Muriithi |
| 2025-03-21 | Add "PubMed_ID" field•••The "PubMed_ID" field allows the user to edit the publication that's attached to each phenotype trait. | Frederick Muriuki Muriithi |
| 2025-03-21 | Bulk Edit: Initialise the bulk-edit upload•••* Provide UI for uploading the file * Provide (partially implemented) endpoint to handle the uploaded file. | Frederick Muriuki Muriithi |
| 2025-03-21 | Rename endpoint: Distinguish edit download from other downloads. | Frederick Muriuki Muriithi |
| 2025-03-18 | Enable downloading of dataset's phenotype's data. | Frederick Muriuki Muriithi |
| 2025-02-18 | Extract common pattern into generic function. | Frederick Muriuki Muriithi |
| 2025-02-18 | Enable creating new populations on the "Phenotype Data" path.•••Enable creating new populations in the case where the population a user wants to use does not exist in the database. | Frederick Muriuki Muriithi |
| 2025-02-18 | Redirect to "Create Species" page if user selects it.•••Add the "Create Species" sub-step to the phenotype data path. | Frederick Muriuki Muriithi |
| 2025-02-18 | Select from searchable list and allow new species creation.•••Select the species to use from a searchable list. In case the species does not exist in the list, allow creation of the list. | Frederick Muriuki Muriithi |
| 2025-01-29 | Fetch all phenotypes for display with DataTables. | Frederick Muriuki Muriithi |
| 2025-01-28 | Use a more robust check for emptiness.•••Some of the values could be integer values. | Frederick Muriuki Muriithi |
| 2025-01-28 | Fix type-checking issues. | Frederick Muriuki Muriithi |
| 2025-01-28 | Fix linting issues. | Frederick Muriuki Muriithi |
| 2025-01-28 | Update endpoint: Make it more consistent. | Frederick Muriuki Muriithi |
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index : gn-uploader | |
| gn-uploader: Data uploader for GeneNetwork |
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