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gn-uploader: Data uploader for GeneNetwork
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models.py
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Author
7 days
Handle big deletes: Delete in batches.
Frederick Muriuki Muriithi
11 days
Add function to delete phenotypes completely.
Frederick Muriuki Muriithi
11 days
Add function to delete numeric data for phenotypes.
Frederick Muriuki Muriithi
11 days
Use correct classes for type-hints.
Frederick Muriuki Muriithi
2025-12-19
Delete unused function.
Frederick Muriuki Muriithi
2025-12-19
Fix issues caught by type-checker.
Frederick Muriuki Muriithi
2025-12-17
Fix linting problems.
Frederick Muriuki Muriithi
2025-11-19
Add function to retrieve vector data for phenotypes from the db.
Frederick Muriuki Muriithi
2025-10-13
Fix linting errors.
Frederick Muriuki Muriithi
2025-08-25
Create and cross-reference phenotypes
Frederick Muriuki Muriithi
2025-08-25
Preprocess phenotype data and return normalised form.
Frederick Muriuki Muriithi
2025-07-14
Fix linting issues.
Frederick Muriuki Muriithi
2025-07-14
Fix imports
Frederick Muriuki Muriithi
2025-07-14
Do not enter IDs in files in the description field.
Frederick Muriuki Muriithi
2025-07-02
Update descriptions and abbreviations
Frederick Muriuki Muriithi
2025-06-24
Use positional parameters rather than named ones.
Frederick Muriuki Muriithi
2025-06-10
Bug: Fix logging.
Frederick Muriuki Muriithi
2025-06-03
Save data with `LOAD DATA INFILE …` query
Frederick Muriuki Muriithi
2025-06-03
Increase number of rows per query.
Frederick Muriuki Muriithi
2025-06-03
Debug the query: useful to figure out what's happening.
Frederick Muriuki Muriithi
2025-06-03
Memory saving: Don't reload saved data
Frederick Muriuki Muriithi
2025-06-02
Add some debugging statements.
Frederick Muriuki Muriithi
2025-06-02
Parametrize the "DataId" column for different tables.
Frederick Muriuki Muriithi
2025-06-02
Explicitly query for newly entered data.
Frederick Muriuki Muriithi
2025-05-30
Fix typo: Fix table name.
Frederick Muriuki Muriithi
2025-05-30
Bug: Loop until the data is exhausted.
Frederick Muriuki Muriithi
2025-05-30
Fix typo, and bug.
Frederick Muriuki Muriithi
2025-05-30
Fix indentation.
Frederick Muriuki Muriithi
2025-05-30
Use full table names rather than aliases
Frederick Muriuki Muriithi
2025-05-19
Add function to save the numerical data for phenotypes.
Frederick Muriuki Muriithi
2025-05-05
Save/Create new phenotypes in the database.
Frederick Muriuki Muriithi
2025-04-21
Use module-specific logger.
Frederick Muriuki Muriithi
2025-04-21
Add "DataId" to top-level trait details.
Frederick Muriuki Muriithi
2025-03-21
Add "PubMed_ID" field
Frederick Muriuki Muriithi
2025-03-18
Enable downloading of dataset's phenotype's data.
Frederick Muriuki Muriithi
2025-03-17
Include InbredSetId: Useful for querying data.
Frederick Muriuki Muriithi
2025-01-29
Update field name.
Frederick Muriuki Muriithi
2025-01-27
Fix bug in how the SE and N values for a phenotype are fetched.
Frederick Muriuki Muriithi
2025-01-25
Add function to retrieve a phenotype's publication data.
Frederick Muriuki Muriithi
2025-01-25
Add the "StrainId" field to phenotype data rows.
Frederick Muriuki Muriithi
2024-11-22
Use gn-libs code for db connection.
Frederick Muriuki Muriithi
2024-10-07
Create new phenotype dataset (PublishFreeze).
Frederick Muriuki Muriithi
2024-09-30
BugFix: Ensure all data items show up.
Frederick Muriuki Muriithi
2024-09-30
Initialise views for a specific phenotype
Frederick Muriuki Muriithi
2024-09-27
Remove unused placeholders for now.
Frederick Muriuki Muriithi
2024-09-27
Improve query for fetching a phenotype dataset's data
Frederick Muriuki Muriithi
2024-09-27
Show some details for a phenotype dataset.
Frederick Muriuki Muriithi
2024-09-26
Start building up the view dataset endpoint
Frederick Muriuki Muriithi
2024-09-26
List the phenotype datasets.
Frederick Muriuki Muriithi