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gn-uploader: Data uploader for GeneNetwork
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models.py
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Author
2025-08-25
Create and cross-reference phenotypes
Frederick Muriuki Muriithi
2025-08-25
Preprocess phenotype data and return normalised form.
Frederick Muriuki Muriithi
2025-07-14
Fix linting issues.
Frederick Muriuki Muriithi
2025-07-14
Fix imports
Frederick Muriuki Muriithi
2025-07-14
Do not enter IDs in files in the description field.
Frederick Muriuki Muriithi
2025-07-02
Update descriptions and abbreviations
Frederick Muriuki Muriithi
2025-06-24
Use positional parameters rather than named ones.
Frederick Muriuki Muriithi
2025-06-10
Bug: Fix logging.
Frederick Muriuki Muriithi
2025-06-03
Save data with `LOAD DATA INFILE …` query
Frederick Muriuki Muriithi
2025-06-03
Increase number of rows per query.
Frederick Muriuki Muriithi
2025-06-03
Debug the query: useful to figure out what's happening.
Frederick Muriuki Muriithi
2025-06-03
Memory saving: Don't reload saved data
Frederick Muriuki Muriithi
2025-06-02
Add some debugging statements.
Frederick Muriuki Muriithi
2025-06-02
Parametrize the "DataId" column for different tables.
Frederick Muriuki Muriithi
2025-06-02
Explicitly query for newly entered data.
Frederick Muriuki Muriithi
2025-05-30
Fix typo: Fix table name.
Frederick Muriuki Muriithi
2025-05-30
Bug: Loop until the data is exhausted.
Frederick Muriuki Muriithi
2025-05-30
Fix typo, and bug.
Frederick Muriuki Muriithi
2025-05-30
Fix indentation.
Frederick Muriuki Muriithi
2025-05-30
Use full table names rather than aliases
Frederick Muriuki Muriithi
2025-05-19
Add function to save the numerical data for phenotypes.
Frederick Muriuki Muriithi
2025-05-05
Save/Create new phenotypes in the database.
Frederick Muriuki Muriithi
2025-04-21
Use module-specific logger.
Frederick Muriuki Muriithi
2025-04-21
Add "DataId" to top-level trait details.
Frederick Muriuki Muriithi
2025-03-21
Add "PubMed_ID" field
Frederick Muriuki Muriithi
2025-03-18
Enable downloading of dataset's phenotype's data.
Frederick Muriuki Muriithi
2025-03-17
Include InbredSetId: Useful for querying data.
Frederick Muriuki Muriithi
2025-01-29
Update field name.
Frederick Muriuki Muriithi
2025-01-27
Fix bug in how the SE and N values for a phenotype are fetched.
Frederick Muriuki Muriithi
2025-01-25
Add function to retrieve a phenotype's publication data.
Frederick Muriuki Muriithi
2025-01-25
Add the "StrainId" field to phenotype data rows.
Frederick Muriuki Muriithi
2024-11-22
Use gn-libs code for db connection.
Frederick Muriuki Muriithi
2024-10-07
Create new phenotype dataset (PublishFreeze).
Frederick Muriuki Muriithi
2024-09-30
BugFix: Ensure all data items show up.
Frederick Muriuki Muriithi
2024-09-30
Initialise views for a specific phenotype
Frederick Muriuki Muriithi
2024-09-27
Remove unused placeholders for now.
Frederick Muriuki Muriithi
2024-09-27
Improve query for fetching a phenotype dataset's data
Frederick Muriuki Muriithi
2024-09-27
Show some details for a phenotype dataset.
Frederick Muriuki Muriithi
2024-09-26
Start building up the view dataset endpoint
Frederick Muriuki Muriithi
2024-09-26
List the phenotype datasets.
Frederick Muriuki Muriithi