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2024-06-13Fix tests and issues caught by tests.update-templates-for-bootstrapFrederick Muriuki Muriithi
2024-04-08Fix issues caught by integration tests.Frederick Muriuki Muriithi
2024-02-28tests: test with just the message - don't include markupFrederick Muriuki Muriithi
2024-02-28tests: Update unit tests: remove use of obsoleted functions.Frederick Muriuki Muriithi
2024-02-20Track filename in the errorsFrederick Muriuki Muriithi
2024-02-20Generalise fetching of samples/cases/individuals.Frederick Muriuki Muriithi
2024-02-20Read samples from geno file.Frederick Muriuki Muriithi
2024-02-12Build generic decimal places checker.Frederick Muriuki Muriithi
2024-02-12Provide the key for each file listed in the control file.Frederick Muriuki Muriithi
2024-02-08Use error objects rather than plain tuple values.Frederick Muriuki Muriithi
2024-02-06Check that pheno values are numerical and at least 3 decimal placesFrederick Muriuki Muriithi
2024-02-05Check that data in geno file is validFrederick Muriuki Muriithi
2024-02-05Fix linting and type errors.Frederick Muriuki Muriithi
2024-02-05Retrieve list of all files, and list of missing filesFrederick Muriuki Muriithi
2024-02-02Ensure control file defaults are set up in code.Frederick Muriuki Muriithi
2024-01-24Checks: Update code and tests to ensure all checks pass.Frederick Muriuki Muriithi
2024-01-23Tests: Use prefixes in tests rather than starting redis serverFrederick Muriuki Muriithi
2024-01-20Fetch sample/case names from databaseFrederick Muriuki Muriithi
2024-01-15Update imports: `take` was moved to different package.Frederick Muriuki Muriithi
2024-01-15Process `na.strings` even for default casesFrederick Muriuki Muriithi
2024-01-10Make identifier column name explicitFrederick Muriuki Muriithi
2024-01-09Raise exception on reading non-existing fileFrederick Muriuki Muriithi
2024-01-05Add missing import.Frederick Muriuki Muriithi
2024-01-05Revert "QC: Check for only one decimal place."Frederick Muriuki Muriithi
2024-01-04Parse sex information from R/qtl bundle.Frederick Muriuki Muriithi
2024-01-04Parse cross information from R/qtl2 bundle.Frederick Muriuki Muriithi
2024-01-04Process sex and cross information data in "covar" files.Frederick Muriuki Muriithi
2024-01-04Rename test moduleFrederick Muriuki Muriithi
2024-01-04Parse multiple files with same file key.Frederick Muriuki Muriithi
2024-01-04Test parsing of multiple files for single keyFrederick Muriuki Muriithi
2024-01-04Add tests for parsing cross information (covar) files.Frederick Muriuki Muriithi
2024-01-04Add tests for parsing 'phenocovar' files.Frederick Muriuki Muriithi
2024-01-04Rename test module.Frederick Muriuki Muriithi
2024-01-03Use generic parser. Remove obsoleted functions.Frederick Muriuki Muriithi
2024-01-03Parse founder_geno files. Generalise parsing files.Frederick Muriuki Muriithi
2024-01-03Add tests for `founder_geno` parsing.Frederick Muriuki Muriithi
2024-01-03Parse the phenotype data from the R/qtl2 bundle.Frederick Muriuki Muriithi
2024-01-03Extract processing of transposed files into reusable function.Frederick Muriuki Muriithi
2024-01-02Mark tests as unit tests.Frederick Muriuki Muriithi
2023-12-28Rework parsing of transposed geno files.Frederick Muriuki Muriithi
2023-12-28Handle transposed geno files.Frederick Muriuki Muriithi
2023-12-27Tests: Test parsing of non-transposed geno files.Frederick Muriuki Muriithi
2023-12-27Tests: Test parsing of pmap files. Merge testing of map files.Frederick Muriuki Muriithi
2023-12-27Tests: Add tests for parsing gmap files.Frederick Muriuki Muriithi
2023-12-20Provide instance_path at client creation.Frederick Muriuki Muriithi
2023-12-20Stop relying on "GUIX_ENVIRONMENT" envvarFrederick Muriuki Muriithi
2023-11-24QC: Check for only one decimal place.Frederick Muriuki Muriithi
2023-11-15Linting: Fix linting errors.Frederick Muriuki Muriithi
2022-11-16tests: Fix some failing testsFrederick Muriuki Muriithi
2022-11-16qc: Allow whole numbers or numbers where the decimals are all zeroesFrederick Muriuki Muriithi
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