Age | Commit message (Collapse) | Author | |
---|---|---|---|
2024-02-28 | tests: Update unit tests: remove use of obsoleted functions. | Frederick Muriuki Muriithi | |
2024-02-20 | Generalise fetching of samples/cases/individuals. | Frederick Muriuki Muriithi | |
2024-01-15 | Process `na.strings` even for default cases | Frederick Muriuki Muriithi | |
There was a bug where the `na.strings` were not processed correctly if the user called the `r_qtl.r_qtl2.file_data(...)` function without explicitly providing the `process_*` arguments. This commit fixes that. | |||
2024-01-10 | Make identifier column name explicit | Frederick Muriuki Muriithi | |
Since the R/qtl2 bundle generator could name the identifier column anything, this commit converts the incoming identifier column name into something explicit that we know and can use. | |||
2024-01-04 | Add tests for parsing 'phenocovar' files. | Frederick Muriuki Muriithi | |
2024-01-03 | Use generic parser. Remove obsoleted functions. | Frederick Muriuki Muriithi | |
2024-01-03 | Parse the phenotype data from the R/qtl2 bundle. | Frederick Muriuki Muriithi | |