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| author | Frederick Muriuki Muriithi | 2024-01-10 04:44:53 +0300 |
|---|---|---|
| committer | Frederick Muriuki Muriithi | 2024-01-10 04:44:53 +0300 |
| commit | 9322da0f79dfa4c3f9f899f5a861ce302ce21e9c (patch) | |
| tree | ad3ac4b8d5791219392eba77067c2c0ce71e25e1 /tests/r_qtl/test_r_qtl2_pheno.py | |
| parent | 21078fecb698972062af3157a9a0f6e84bb8fd0d (diff) | |
| download | gn-uploader-9322da0f79dfa4c3f9f899f5a861ce302ce21e9c.tar.gz | |
Make identifier column name explicit
Since the R/qtl2 bundle generator could name the identifier column
anything, this commit converts the incoming identifier column name
into something explicit that we know and can use.
Diffstat (limited to 'tests/r_qtl/test_r_qtl2_pheno.py')
| -rw-r--r-- | tests/r_qtl/test_r_qtl2_pheno.py | 20 |
1 files changed, 10 insertions, 10 deletions
diff --git a/tests/r_qtl/test_r_qtl2_pheno.py b/tests/r_qtl/test_r_qtl2_pheno.py index 66850a0..a7de675 100644 --- a/tests/r_qtl/test_r_qtl2_pheno.py +++ b/tests/r_qtl/test_r_qtl2_pheno.py @@ -36,17 +36,17 @@ def test_parse_pheno_files(filepath, expected): @pytest.mark.parametrize( "filepath,expected", (("tests/r_qtl/test_files/test_phenocovar.zip", - ({"pheno": "T0", "time (hrs)": "0"}, - {"pheno": "T2", "time (hrs)": "0.0333333333333333"}, - {"pheno": "T4", "time (hrs)": "0.0666666666666667"}, - {"pheno": "T6", "time (hrs)": "0.1"}, - {"pheno": "T8", "time (hrs)": "0.133333333333333"})), + ({"id": "T0", "time (hrs)": "0"}, + {"id": "T2", "time (hrs)": "0.0333333333333333"}, + {"id": "T4", "time (hrs)": "0.0666666666666667"}, + {"id": "T6", "time (hrs)": "0.1"}, + {"id": "T8", "time (hrs)": "0.133333333333333"})), ("tests/r_qtl/test_files/test_phenocovar_transposed.zip", - ({"pheno": "T0", "time (hrs)": "0"}, - {"pheno": "T2", "time (hrs)": "0.0333333333333333"}, - {"pheno": "T4", "time (hrs)": "0.0666666666666667"}, - {"pheno": "T6", "time (hrs)": "0.1"}, - {"pheno": "T8", "time (hrs)": "0.133333333333333"})))) + ({"id": "T0", "time (hrs)": "0"}, + {"id": "T2", "time (hrs)": "0.0333333333333333"}, + {"id": "T4", "time (hrs)": "0.0666666666666667"}, + {"id": "T6", "time (hrs)": "0.1"}, + {"id": "T8", "time (hrs)": "0.133333333333333"})))) def test_parse_phenocovar_files(filepath, expected): """Test parsing of 'phenocovar' files from the R/qtl2 bundle. |