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Add a generic worker script, whose purpose is:
- to launch the specific worker script
- to capture both stdin and stderr streams and put them on redis
In this way, we can launch redis-aware and redis-unaware workers and
capture their outputs or errors for later processing.
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As preparation for building a new generic worker script, this commit
renames the file validation script from 'worker.py' to
'validate_file.py' so as to ensure the name conforms better to what
the script does.
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Use the builtin mimetypes which gives better results
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The number columns in each contents line should be equal to the nember
of columns in the header line.
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Enable the user to abort the background parsing of the file.
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Enable the progress status page to show all the errors found at any
point during the processing of the file.
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- README.org: document how to run scripts manually
- manifest.scm: remove python-rq as a dependency
- qc_app/jobs.py: rework job launching and processing
- qc_app/parse.py: use reworked job processing
- qc_app/templates/job_progress.html: display progress correctly
- qc_app/templates/parse_results.html: display final results
- scripts/worker.py: new worker script
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Since progress indication is not part of the parsing, this commit
extracts the progress indication into functions with well defined
input arguments that hide the progress indication logic from the
parsing function.
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Use the new code that collects the errors in the CLI client.
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- Use a way faster way of parsing the strains file
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While the application is developed with GNU Guix, the end user might
not be using it, and therefore, this commit provides a way for the
user to install the application with the usual python package
management systems.
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