| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 2 days | Process the untransposed files. | Frederick Muriuki Muriithi | |
| 2 days | BugFix: Fix typing. | Frederick Muriuki Muriithi | |
| 2 days | BugFix: Check for equality rather than membership. Update keys. | Frederick Muriuki Muriithi | |
| 2 days | Add function to read file contents. | Frederick Muriuki Muriithi | |
| 2 days | Bugfix: (Syntax) Remove commas | Frederick Muriuki Muriithi | |
| 2 days | Add missing imports. | Frederick Muriuki Muriithi | |
| 2 days | Initialise scripts for genotype uploads files' processing. | Frederick Muriuki Muriithi | |
| 2026-09-04 | Ignore an issue caught by pylint. | Frederick Muriuki Muriithi | |
| 2026-04-16 | Improve error messages. | Frederick Muriuki Muriithi | |
| To help users better understand what the problem with their data is, the errors need to be clearer to them. This commit fixes some error messages. | |||
| 2026-04-16 | Fix bug with cascade of name checks. | Frederick Muriuki Muriithi | |
| The `meta["data_name"]` statement was leading to an exception in any case where the "data_name" key is not provided. This defeats the purpose of allowing either "dataname" or "data_name". This commit fixes that, while handling the case where neither one of the two are provided. | |||
| 2026-04-15 | Update to error log, because it's an error, even though we return 0. | Frederick Muriuki Muriithi | |
| 2026-04-15 | Move tracing details to INFO loglevel rather than debug. | Frederick Muriuki Muriithi | |
| We need to trace the auth process so as to help with debugging resource creation failures. | |||
| 2026-04-15 | Pull helper function out of main(). | Frederick Muriuki Muriithi | |
| 2026-04-09 | Use multiple threads to speed up the computations. | Frederick Muriuki Muriithi | |
| 2026-04-09 | Specify the --permu_output option to QTLReaper | Frederick Muriuki Muriithi | |
| Specify the --permu_output option to QTLReaper to prevent it from attempting to write to the working directory, which in the guix containers is a READONLY file system. | |||
| 2026-04-09 | pylint: non-assigned expressions - silence linter. | Frederick Muriuki Muriithi | |
| 2026-04-09 | Prompt user for a name for the resource object. | Frederick Muriuki Muriithi | |
| 2026-03-25 | Add the DATASET-ID argument to command-line interfaces. | Frederick Muriuki Muriithi | |
| 2026-03-11 | Check exit code of the Rust QTLReaper script. | Frederick Muriuki Muriithi | |
| 2026-03-11 | Check whether files exist before attempting to operate on them. | Frederick Muriuki Muriithi | |
| 2026-03-11 | Set "RUST_BACKTRACE" envvar if loglevel is DEBUG. | Frederick Muriuki Muriithi | |
| 2026-02-06 | Fix bug: convert values to strings first. | Frederick Muriuki Muriithi | |
| 2026-02-06 | Print out the correct error message. | Frederick Muriuki Muriithi | |
| 2026-01-30 | Delete temporary file after completing deletion. | Frederick Muriuki Muriithi | |
| 2026-01-30 | Add messages to script to indicate progress. | Frederick Muriuki Muriithi | |
| 2026-01-30 | Fix bug in reading file: Ensure to read all lines. | Frederick Muriuki Muriithi | |
| 2026-01-27 | Build script to delete phenotypes. | Frederick Muriuki Muriithi | |
| 2026-01-13 | Migrate background job to use SQLite rather than Redis. | Frederick Muriuki Muriithi | |
| 2025-12-19 | Fix issues caught by type-checker. | Frederick Muriuki Muriithi | |
| 2025-12-17 | Fix linting problems. | Frederick Muriuki Muriithi | |
| 2025-12-16 | Typo: Fix name of CLI variable. | Frederick Muriuki Muriithi | |
| 2025-12-03 | Remove possible credentials leak. | Frederick Muriuki Muriithi | |
| 2025-12-03 | Remove unnecessary comment. | Frederick Muriuki Muriithi | |
| 2025-12-03 | Fix exitcode: Ensure correct exit code is returned. | Frederick Muriuki Muriithi | |
| 2025-11-26 | scripts: Add script to run background QTLReaper process. | Frederick Muriuki Muriithi | |
| 2025-11-19 | CLI: Add validator that checks path exists and is a directory. | Frederick Muriuki Muriithi | |
| 2025-11-19 | Add function to setup logging for scripts. | Frederick Muriuki Muriithi | |
| 2025-11-19 | Add utility functions for common CLI options/arguments. | Frederick Muriuki Muriithi | |
| 2025-11-19 | Initialise package for CLI utilities. | Frederick Muriuki Muriithi | |
| 2025-11-05 | Fix issues caught by linter. | Frederick Muriuki Muriithi | |
| 2025-11-05 | Extract common CLI option to separate utility function. | Frederick Muriuki Muriithi | |
| 2025-11-05 | Provide script to compute means for phenotypes. | Frederick Muriuki Muriithi | |
| 2025-08-28 | Compute the means for the data. | Frederick Muriuki Muriithi | |
| 2025-08-26 | Update script to use newer form of `create_new_phenotypes` function. | Frederick Muriuki Muriithi | |
| 2025-07-14 | Handle case where authorisation is already set up. | Frederick Muriuki Muriithi | |
| 2025-07-14 | Restore original names and instead ignore specific linter errors. | Frederick Muriuki Muriithi | |
| 2025-07-14 | Fix linting issues. | Frederick Muriuki Muriithi | |
| 2025-07-14 | Provide timeouts for requests calls. | Frederick Muriuki Muriithi | |
| 2025-07-14 | Remove unused script | Frederick Muriuki Muriithi | |
| The bulk edit feature is no longer supported in the uploader. | |||
| 2025-07-14 | Fix imports | Frederick Muriuki Muriithi | |
| Remove unused imports, update old imports to newer forms and add missing imports. | |||
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index : gn-uploader | |
| gn-uploader: Data uploader for GeneNetwork |
| about summary refs log tree commit diff |