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rqtl2
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phenotypes_qc.py
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2024-12-03
Fix some linting and mypy issues.
Frederick Muriuki Muriithi
2024-12-03
Improve error text
Frederick Muriuki Muriithi
2024-12-03
Update file metadata using a mapping
Frederick Muriuki Muriithi
2024-12-03
Provide consistent way to build file-specific fully-qualified keys
Frederick Muriuki Muriithi
2024-12-03
Save 'pheno' errors in redis as they are found.
Frederick Muriuki Muriithi
2024-12-03
Add some phenocovar metadata.
Frederick Muriuki Muriithi
2024-12-03
Save phenocovar errors in redis as they are found.
Frederick Muriuki Muriithi
2024-12-03
Pass the redis connection and fully qualified job id
Frederick Muriuki Muriithi
2024-12-02
Fix typo.
Frederick Muriuki Muriithi
2024-12-02
Return 0 on completion of QC processing.
Frederick Muriuki Muriithi
2024-10-24
Reduce number of local variables created in function.
Frederick Muriuki Muriithi
2024-10-24
Add `jobid` to extraction directory
Frederick Muriuki Muriithi
2024-10-24
Check pheno, phenose, and phenonum files with logging
Frederick Muriuki Muriithi
2024-10-24
Check phenocovar files with logging
Frederick Muriuki Muriithi
2024-10-24
Fix linting and typing errors.
Frederick Muriuki Muriithi
2024-10-24
Move logger creation to `build_main` function
Frederick Muriuki Muriithi
2024-10-22
Refactor `qc_pheno_file` and reuse it for different file types.
Frederick Muriuki Muriithi
2024-10-22
Check for errors in `pheno` files.
Frederick Muriuki Muriithi
2024-10-21
Check `phenocovar` files for errors.
Frederick Muriuki Muriithi
2024-10-17
Cleanup: Delete all extracted files after processing.
Frederick Muriuki Muriithi
2024-10-17
Leave TODO notes for what needs to be done.
Frederick Muriuki Muriithi
2024-10-17
Fetch samples from database
Frederick Muriuki Muriithi
2024-10-17
Undo transpose for any transposed files
Frederick Muriuki Muriithi
2024-10-17
Pass new arguments to QC function.
Frederick Muriuki Muriithi
2024-10-17
Add `speciesid` and `populationid` arguments to the script.
Frederick Muriuki Muriithi
2024-10-17
Add the working directory argument to the script.
Frederick Muriuki Muriithi
2024-10-17
Extract the R/qtl2 bundle for processing.
Frederick Muriuki Muriithi
2024-10-14
Initialise background script for running QC on phenotype bundles.
Frederick Muriuki Muriithi
