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path: root/scripts/rqtl2/install_phenos.py
AgeCommit message (Expand)Author
2024-12-03Pass the redis connection and fully qualified job id...Pass the redis connection on to the function used to build main since it might need to use a connection to redis. Also pass the computed fully qualified job id rather than recomputing it every time. Update dependent functions to take the new arguments. Frederick Muriuki Muriithi
2024-10-24Parse entire namespace object rather than individual values.Frederick Muriuki Muriithi
2024-10-24Move logger creation to `build_main` function...Since the module-level loggers are built mostly the same, move the creation of the logger to the more general function to reduce repetition. Frederick Muriuki Muriithi
2024-04-03Reduce size of data inserted per query...Reduce the size of data inserted per query since MariDB allows a packet with a maximum size of 1GB. This should hopefully resolve the …OperationalError: (2006, 'Server has gone away') error. Frederick Muriuki Muriithi
2024-02-05Fix linting and type errors.Frederick Muriuki Muriithi
2024-01-22scripts: Pass in logger to get detailed updates.Frederick Muriuki Muriithi
2024-01-19scripts: Process R/qtl2 bundle...Build script to start the processing of the R/qtl2 bundle. Frederick Muriuki Muriithi
2024-01-16Filter out items with values of `None`....The ProbeSetData table does not allow `NULL` for the `value` column for good reason - if there is no value, just don't have a record for that particular sample. Frederick Muriuki Muriithi
2024-01-15Update imports: `take` was moved to different package.Frederick Muriuki Muriithi
2024-01-15Process the `pheno` files....Process the data in the pheno files and insert it into the database. Frederick Muriuki Muriithi
2024-01-15Initialise `install_phenos` script.Frederick Muriuki Muriithi