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path: root/scripts/rqtl2/install_phenos.py
AgeCommit message (Expand)Author
2024-04-03Reduce size of data inserted per query•••Reduce the size of data inserted per query since MariDB allows a packet with a maximum size of 1GB. This should hopefully resolve the …OperationalError: (2006, 'Server has gone away') error. Frederick Muriuki Muriithi
2024-02-05Fix linting and type errors.Frederick Muriuki Muriithi
2024-01-22scripts: Pass in logger to get detailed updates.Frederick Muriuki Muriithi
2024-01-19scripts: Process R/qtl2 bundle•••Build script to start the processing of the R/qtl2 bundle. Frederick Muriuki Muriithi
2024-01-16Filter out items with values of `None`.•••The ProbeSetData table does not allow `NULL` for the `value` column for good reason - if there is no value, just don't have a record for that particular sample. Frederick Muriuki Muriithi
2024-01-15Update imports: `take` was moved to different package.Frederick Muriuki Muriithi
2024-01-15Process the `pheno` files.•••Process the data in the pheno files and insert it into the database. Frederick Muriuki Muriithi
2024-01-15Initialise `install_phenos` script.Frederick Muriuki Muriithi