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path: root/scripts/qc.py
AgeCommit message (Expand)Author
2024-11-22Use gn-libs code for db connection....Use the code in gn-libs to connect to the database, rather than a local module. Frederick Muriuki Muriithi
2024-07-25Rename module: qc_app --> uploaderFrederick Muriuki Muriithi
2024-01-20Fetch sample/case names from database...Fetch the sample/case names from the database rather than from a static file in the repository. Issue: https://issues.genenetwork.org/issues/quality-control/read-samples-from-database-by-species Frederick Muriuki Muriithi
2024-01-15Update imports: `take` was moved to different package.Frederick Muriuki Muriithi
2022-07-07Replace 'magic' with builtin 'mimetypes'...Use the builtin mimetypes which gives better results Frederick Muriuki Muriithi
2022-06-28Check for inconsistent columns...The number columns in each contents line should be equal to the nember of columns in the header line. Frederick Muriuki Muriithi
2022-05-19Extract progress indication from the parsing...Since progress indication is not part of the parsing, this commit extracts the progress indication into functions with well defined input arguments that hide the progress indication logic from the parsing function. Frederick Muriuki Muriithi
2022-05-18Update CLI: use new error collection code...Use the new code that collects the errors in the CLI client. Frederick Muriuki Muriithi
2022-05-11Tag string as a python f-string to fix error display bugFrederick Muriuki Muriithi
2022-05-02Optimise strain names parsing...- Use a way faster way of parsing the strains file Frederick Muriuki Muriithi
2022-04-27Enable managing app via setup.py...While the application is developed with GNU Guix, the end user might not be using it, and therefore, this commit provides a way for the user to install the application with the usual python package management systems. Frederick Muriuki Muriithi