Age | Commit message (Expand) | Author |
2024-12-09 | Handle common typo likely to exist in control files. | Frederick Muriuki Muriithi |
2024-10-24 | Fix linting and typing errors. | Frederick Muriuki Muriithi |
2024-10-21 | Add utilities for reading text files and csv files | Frederick Muriuki Muriithi |
2024-10-17 | Ignore comment lines. | Frederick Muriuki Muriithi |
2024-10-14 | Update typing information. | Frederick Muriuki Muriithi |
2024-10-14 | Improve error messages for R/qtl2 code. | Frederick Muriuki Muriithi |
2024-08-28 | Fix imports, and minor bugs. | Frederick Muriuki Muriithi |
2024-08-12 | Bug: Ensure file type values are lists. | Frederick Muriuki Muriithi |
2024-08-12 | Update check for missing files: Check from directory. | Frederick Muriuki Muriithi |
2024-08-12 | Add utility to transpose CSVs, renaming the original file. | Frederick Muriuki Muriithi |
2024-08-12 | Define new InvalidValue error type. | Frederick Muriuki Muriithi |
2024-08-12 | Rename module: Module contains exceptions classes. | Frederick Muriuki Muriithi |
2024-08-09 | Read R/qtl2 control data from a directory with extracted files. | Frederick Muriuki Muriithi |
2024-08-08 | Function to transpose CSV files. | Frederick Muriuki Muriithi |
2024-08-08 | Add utility function to extract R/qtl2 zip bundles | Frederick Muriuki Muriithi |
2024-06-20 | Check for special files that might share names/extensions | Frederick Muriuki Muriithi |
2024-02-21 | Check that samples/cases are consistent | Frederick Muriuki Muriithi |
2024-02-20 | Track filename in the errors | Frederick Muriuki Muriithi |
2024-02-20 | Generalise fetching of samples/cases/individuals. | Frederick Muriuki Muriithi |
2024-02-20 | Read samples from geno file. | Frederick Muriuki Muriithi |
2024-02-20 | Read each file separately | Frederick Muriuki Muriithi |
2024-02-20 | Stand-alone function to read control file | Frederick Muriuki Muriithi |
2024-02-16 | Replace genotype codes with values in control file. | Frederick Muriuki Muriithi |
2024-02-16 | Convert missing value codes to None | Frederick Muriuki Muriithi |
2024-02-16 | Strip comment lines. | Frederick Muriuki Muriithi |
2024-02-16 | Read raw text data from a file in the zip bundle | Frederick Muriuki Muriithi |
2024-02-13 | Make "FILE_TYPES" part of public interface for module/package. | Frederick Muriuki Muriithi |
2024-02-12 | Refactor: Use new decimal places checker. | Frederick Muriuki Muriithi |
2024-02-12 | Check for errors in the 'phenose' file. | Frederick Muriuki Muriithi |
2024-02-12 | Provide the key for each file listed in the control file. | Frederick Muriuki Muriithi |
2024-02-08 | Generalise error retrieval: extract common structure | Frederick Muriuki Muriithi |
2024-02-08 | Use error objects rather than plain tuple values. | Frederick Muriuki Muriithi |
2024-02-06 | Check that pheno values are numerical and at least 3 decimal places | Frederick Muriuki Muriithi |
2024-02-05 | Check that data in geno file is valid | Frederick Muriuki Muriithi |
2024-02-05 | Fix linting and type errors. | Frederick Muriuki Muriithi |
2024-02-05 | Do general bundle validation and show errors | Frederick Muriuki Muriithi |
2024-02-05 | Retrieve list of all files, and list of missing files | Frederick Muriuki Muriithi |
2024-02-02 | List file types in a single place for easier reuse | Frederick Muriuki Muriithi |
2024-02-02 | Ensure control file defaults are set up in code. | Frederick Muriuki Muriithi |
2024-01-16 | Provide defaults for various control variables | Frederick Muriuki Muriithi |
2024-01-15 | Process `na.strings` even for default cases | Frederick Muriuki Muriithi |
2024-01-15 | Extract common functional tools to separate package. | Frederick Muriuki Muriithi |
2024-01-10 | Provide convenience functions to avoid subtle call errors | Frederick Muriuki Muriithi |
2024-01-10 | Make identifier column name explicit | Frederick Muriuki Muriithi |
2024-01-09 | Raise exception on reading non-existing file | Frederick Muriuki Muriithi |
2024-01-08 | Upload R/qtl2 zip bundle and check for errors. | Frederick Muriuki Muriithi |
2024-01-04 | Parse sex information from R/qtl bundle. | Frederick Muriuki Muriithi |
2024-01-04 | Parse cross information from R/qtl2 bundle. | Frederick Muriuki Muriithi |
2024-01-04 | Process sex and cross information data in "covar" files. | Frederick Muriuki Muriithi |
2024-01-04 | Parse multiple files with same file key. | Frederick Muriuki Muriithi |