gn-uploader - gn-uploader: Data uploader for GeneNetwork

Age	Commit message (Expand)	Author
2024-02-20	Generalise fetching of samples/cases/individuals.	Frederick Muriuki Muriithi
2024-02-20	Read samples from geno file.	Frederick Muriuki Muriithi
2024-02-20	Read each file separately	Frederick Muriuki Muriithi
2024-02-20	Stand-alone function to read control file	Frederick Muriuki Muriithi
2024-02-16	Replace genotype codes with values in control file.	Frederick Muriuki Muriithi
2024-02-16	Convert missing value codes to None	Frederick Muriuki Muriithi
2024-02-16	Strip comment lines.	Frederick Muriuki Muriithi
2024-02-16	Read raw text data from a file in the zip bundle	Frederick Muriuki Muriithi
2024-02-13	Make "FILE_TYPES" part of public interface for module/package.	Frederick Muriuki Muriithi
2024-02-12	Refactor: Use new decimal places checker.	Frederick Muriuki Muriithi
2024-02-12	Check for errors in the 'phenose' file.	Frederick Muriuki Muriithi
2024-02-12	Provide the key for each file listed in the control file.	Frederick Muriuki Muriithi
2024-02-08	Generalise error retrieval: extract common structure	Frederick Muriuki Muriithi
2024-02-08	Use error objects rather than plain tuple values.	Frederick Muriuki Muriithi
2024-02-06	Check that pheno values are numerical and at least 3 decimal places	Frederick Muriuki Muriithi
2024-02-05	Check that data in geno file is valid	Frederick Muriuki Muriithi
2024-02-05	Fix linting and type errors.	Frederick Muriuki Muriithi
2024-02-05	Do general bundle validation and show errors	Frederick Muriuki Muriithi
2024-02-05	Retrieve list of all files, and list of missing files	Frederick Muriuki Muriithi
2024-02-02	List file types in a single place for easier reuse	Frederick Muriuki Muriithi
2024-02-02	Ensure control file defaults are set up in code.	Frederick Muriuki Muriithi
2024-01-16	Provide defaults for various control variables	Frederick Muriuki Muriithi
2024-01-15	Process `na.strings` even for default cases	Frederick Muriuki Muriithi
2024-01-15	Extract common functional tools to separate package.	Frederick Muriuki Muriithi
2024-01-10	Provide convenience functions to avoid subtle call errors	Frederick Muriuki Muriithi
2024-01-10	Make identifier column name explicit	Frederick Muriuki Muriithi
2024-01-09	Raise exception on reading non-existing file	Frederick Muriuki Muriithi
2024-01-08	Upload R/qtl2 zip bundle and check for errors.	Frederick Muriuki Muriithi
2024-01-04	Parse sex information from R/qtl bundle.	Frederick Muriuki Muriithi
2024-01-04	Parse cross information from R/qtl2 bundle.	Frederick Muriuki Muriithi
2024-01-04	Process sex and cross information data in "covar" files.	Frederick Muriuki Muriithi
2024-01-04	Parse multiple files with same file key.	Frederick Muriuki Muriithi
2024-01-03	Use generic parser. Remove obsoleted functions.	Frederick Muriuki Muriithi
2024-01-03	Parse founder_geno files. Generalise parsing files.	Frederick Muriuki Muriithi
2024-01-03	Parse the phenotype data from the R/qtl2 bundle.	Frederick Muriuki Muriithi
2024-01-03	Rename argument and add documentation to functions.	Frederick Muriuki Muriithi
2024-01-03	Extract processing of transposed files into reusable function.	Frederick Muriuki Muriithi
2024-01-03	Refactor: Extract potentially reusable functions	Frederick Muriuki Muriithi
2024-01-02	Abstract away non-transposed file processing	Frederick Muriuki Muriithi
2024-01-02	Cleanup: Fix linting and typing errors and update docs.	Frederick Muriuki Muriithi
2023-12-28	Rework parsing of transposed geno files.	Frederick Muriuki Muriithi
2023-12-28	Handle transposed geno files.	Frederick Muriuki Muriithi
2023-12-27	Tests: Test parsing of non-transposed geno files.	Frederick Muriuki Muriithi
2023-12-27	Tests: Add tests for parsing gmap files.	Frederick Muriuki Muriithi
2023-12-25	Generalise to read both genetic and physical maps.	Frederick Muriuki Muriithi
2023-12-25	Read genetic map files	Frederick Muriuki Muriithi
2023-12-20	Read genotype files	Frederick Muriuki Muriithi
2023-12-20	Read R/qtl2 format files	Frederick Muriuki Muriithi