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path: root/r_qtl/r_qtl2.py
AgeCommit message (Expand)Author
2025-07-14Use `yield from …` form.Frederick Muriuki Muriithi
2025-06-02Add note in documentation.Frederick Muriuki Muriithi
2025-06-02Revert "Convert N/A values to NoneType objects."Frederick Muriuki Muriithi
2025-06-02Convert N/A values to NoneType objects.Frederick Muriuki Muriithi
2025-05-30Add new file type.Frederick Muriuki Muriithi
2025-05-19Read headers from a CSV file, whether transposed or not.Frederick Muriuki Muriithi
2024-12-09Handle common typo likely to exist in control files.Frederick Muriuki Muriithi
2024-10-24Fix linting and typing errors.Frederick Muriuki Muriithi
2024-10-21Add utilities for reading text files and csv filesFrederick Muriuki Muriithi
2024-10-17Ignore comment lines.Frederick Muriuki Muriithi
2024-10-14Improve error messages for R/qtl2 code.Frederick Muriuki Muriithi
2024-08-12Bug: Ensure file type values are lists.Frederick Muriuki Muriithi
2024-08-12Add utility to transpose CSVs, renaming the original file.Frederick Muriuki Muriithi
2024-08-12Rename module: Module contains exceptions classes.Frederick Muriuki Muriithi
2024-08-09Read R/qtl2 control data from a directory with extracted files.Frederick Muriuki Muriithi
2024-08-08Function to transpose CSV files.Frederick Muriuki Muriithi
2024-08-08Add utility function to extract R/qtl2 zip bundlesFrederick Muriuki Muriithi
2024-06-20Check for special files that might share names/extensionsFrederick Muriuki Muriithi
2024-02-21Check that samples/cases are consistentFrederick Muriuki Muriithi
2024-02-20Generalise fetching of samples/cases/individuals.Frederick Muriuki Muriithi
2024-02-20Read samples from geno file.Frederick Muriuki Muriithi
2024-02-20Read each file separatelyFrederick Muriuki Muriithi
2024-02-20Stand-alone function to read control fileFrederick Muriuki Muriithi
2024-02-16Replace genotype codes with values in control file.Frederick Muriuki Muriithi
2024-02-16Convert missing value codes to NoneFrederick Muriuki Muriithi
2024-02-16Strip comment lines.Frederick Muriuki Muriithi
2024-02-16Read raw text data from a file in the zip bundleFrederick Muriuki Muriithi
2024-02-13Make "FILE_TYPES" part of public interface for module/package.Frederick Muriuki Muriithi
2024-02-05Check that data in geno file is validFrederick Muriuki Muriithi
2024-02-05Do general bundle validation and show errorsFrederick Muriuki Muriithi
2024-02-02List file types in a single place for easier reuseFrederick Muriuki Muriithi
2024-02-02Ensure control file defaults are set up in code.Frederick Muriuki Muriithi
2024-01-16Provide defaults for various control variablesFrederick Muriuki Muriithi
2024-01-15Process `na.strings` even for default casesFrederick Muriuki Muriithi
2024-01-15Extract common functional tools to separate package.Frederick Muriuki Muriithi
2024-01-10Provide convenience functions to avoid subtle call errorsFrederick Muriuki Muriithi
2024-01-10Make identifier column name explicitFrederick Muriuki Muriithi
2024-01-09Raise exception on reading non-existing fileFrederick Muriuki Muriithi
2024-01-08Upload R/qtl2 zip bundle and check for errors.Frederick Muriuki Muriithi
2024-01-04Parse sex information from R/qtl bundle.Frederick Muriuki Muriithi
2024-01-04Parse cross information from R/qtl2 bundle.Frederick Muriuki Muriithi
2024-01-04Process sex and cross information data in "covar" files.Frederick Muriuki Muriithi
2024-01-04Parse multiple files with same file key.Frederick Muriuki Muriithi
2024-01-03Use generic parser. Remove obsoleted functions.Frederick Muriuki Muriithi
2024-01-03Parse founder_geno files. Generalise parsing files.Frederick Muriuki Muriithi
2024-01-03Parse the phenotype data from the R/qtl2 bundle.Frederick Muriuki Muriithi
2024-01-03Rename argument and add documentation to functions.Frederick Muriuki Muriithi
2024-01-03Extract processing of transposed files into reusable function.Frederick Muriuki Muriithi
2024-01-03Refactor: Extract potentially reusable functionsFrederick Muriuki Muriithi
2024-01-02Abstract away non-transposed file processingFrederick Muriuki Muriithi
generated by cgit-pink 1.4.1 (git 2.36.1) at 2025-11-08 07:05:20 +0000