| Age | Commit message (Expand) | Author |
|---|---|---|
| 2022-06-28 | Check for inconsistent columns...The number columns in each contents line should be equal to the nember of columns in the header line. | Frederick Muriuki Muriithi |
| 2022-06-15 | Fix linting and type errors | Frederick Muriuki Muriithi |
| 2022-06-10 | Enable upload of zipfiles | Frederick Muriuki Muriithi |
| 2022-06-02 | Enable user abortion of file parsing...Enable the user to abort the background parsing of the file. | Frederick Muriuki Muriithi |
| 2022-06-02 | Provide missing argument | Frederick Muriuki Muriithi |
| 2022-05-27 | Accept zeroes | Frederick Muriuki Muriithi |
| 2022-05-27 | Revert "Accept exponential notation for standard-error files"...This reverts commit 960c1a5b831d8761a3e1716f86ded4cc5b67eea0. After meeting with Arthur, it was confirmed that the CSV file should not have values in the exponential notation. | Frederick Muriuki Muriithi |
| 2022-05-20 | Accept exponential notation for standard-error files | Frederick Muriuki Muriithi |
| 2022-05-19 | Extract progress indication from the parsing...Since progress indication is not part of the parsing, this commit extracts the progress indication into functions with well defined input arguments that hide the progress indication logic from the parsing function. | Frederick Muriuki Muriithi |
| 2022-05-18 | Remove obsoleted code. Fix linting errors....Remove the old code that relied on exceptions to parse errors in the uploaded files. | Frederick Muriuki Muriithi |
| 2022-05-18 | Simplify slot names and fix namedtuple type name...- replace `line_number` with `line` and `column_number` with `column` to save on slot name lengths. - Fix the type name for the `DuplicateHeading` namedtuple type | Frederick Muriuki Muriithi |
| 2022-05-18 | Parse files with new non-exception functions...Parse the files with the new functions that return error objects instead of raising exceptions | Frederick Muriuki Muriithi |
| 2022-05-18 | Return errors when found or None otherwise...This commit adds a number of functions that return the error object when an error is found, or `None` otherwise. It avoids the use of exceptions as control flow constructs. | Frederick Muriuki Muriithi |
| 2022-05-02 | Optimise strain names parsing...- Use a way faster way of parsing the strains file | Frederick Muriuki Muriithi |
| 2022-04-27 | Implement command-line interface for QC of files | Frederick Muriuki Muriithi |
| 2022-04-26 | Queue file parsing jobs...Enable the queuing of file parsing jobs, since the files could be really large and take a long time to parse and present results. * etc/default_config.py: Add default config for redis server * manifest.scm: Add redis, and rq as dependencies * qc_app/__init__.py * qc_app/jobs.py: module to hold utilities for management of the jobs * qc_app/parse.py: Enqueue the job - extract file-parsing code to callable function * qc_app/templates/base.html: Enable addition of extra meta tags * qc_app/templates/job_progress.html: template to display job progress * qc_app/templates/no_such_job.html: template to indicate when a job id is invalid * quality_control/parsing.py: Add the total size parsed so far | Frederick Muriuki Muriithi |
| 2022-04-25 | Call parsing function. Fix a few issues....* qc_app/entry.py: Pass filetype onward to parsing endpoint * qc_app/parse.py: Call the function(s) necessary to parse a file * quality_control/errors.py: Fix argument passing to super class | Frederick Muriuki Muriithi |
| 2022-04-25 | Advance seek_position on error...Advance the seek position, once we have yielded up an error to causing an infinite loop in certain conditions, where the `parse_errors` function ends up resuming the gile in the same position once it experiences an error. | Frederick Muriuki Muriithi |
| 2022-04-25 | `take`: function to select a few items from an iterable...To avoid processing all the items in an iterable, the `take` function is added in this commit. It realised a limited number (specified at call time) of items from the iterable given. | Frederick Muriuki Muriithi |
| 2022-04-21 | Collect all the errors...Build a function to collect all the parsing errors into a "sequence" of dict objects containing the issues found. | Frederick Muriuki Muriithi |
| 2022-04-20 | Update parameters for tests...Derive a "correct" sample file from an existing sample file with errors for testing with large files. Fix issue caught by test. | Frederick Muriuki Muriithi |
| 2022-04-20 | Fix linting issues | Frederick Muriuki Muriithi |
| 2022-04-13 | Implement remaining file parsing tests...* Implement remaining file parsing tests and some helpers functions needed for ensuring the tests work. | Frederick Muriuki Muriithi |
| 2022-04-13 | Check for `DuplicateHeader` errors in `parse_file` function | Frederick Muriuki Muriithi |
| 2022-04-13 | Update `valid_header` to pass check for duplicated headers | Frederick Muriuki Muriithi |
| 2022-04-13 | Add test for duplicate headers | Frederick Muriuki Muriithi |
| 2022-04-13 | Implement test for parsing that fails...* Improve tests that ensure parsing fails in case the file has errors * Add strains.csv file * Implement minimum viable functionality that passes the implemented tests | Frederick Muriuki Muriithi |
| 2022-04-13 | Add tests outline for file parsing...Add dummy failing tests and a stub for the parsing of the files | Frederick Muriuki Muriithi |
| 2022-04-13 | Update Exception name...Change the exception name to be more descriptive. | Frederick Muriuki Muriithi |
| 2022-04-11 | Implement MVI for headers validity checking function...Add a minimum viable implementation that passes the tests for the function that checks for the validity of the headers | Frederick Muriuki Muriithi |
| 2022-04-11 | Add tests for headers...* Add tests to check for validity of the headers * Add stubs for the tests | Frederick Muriuki Muriithi |
| 2022-04-11 | Implement MVP for valid_value functions...* Implement the minimum viable functions for the average and standard error `valid_value` functions. | Frederick Muriuki Muriithi |
| 2022-04-11 | Implement tests and stubs for functions under test | Frederick Muriuki Muriithi |
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index : gn-uploader | |
| gn-uploader: Data uploader for GeneNetwork |
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path: root/quality_control