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path: root/quality_control/errors.py
AgeCommit message (Expand)Author
2024-02-20Track filename in the errors...R/qtl2 bundles can contain more than one file, of the same type. When errors are encountered in any of the files, we need to be able to inform the user which file it is, in addition to the line and column number. Frederick Muriuki Muriithi
2022-06-28Check for inconsistent columns...The number columns in each contents line should be equal to the nember of columns in the header line. Frederick Muriuki Muriithi
2022-05-18Remove obsoleted code. Fix linting errors....Remove the old code that relied on exceptions to parse errors in the uploaded files. Frederick Muriuki Muriithi
2022-05-18Simplify slot names and fix namedtuple type name...- replace `line_number` with `line` and `column_number` with `column` to save on slot name lengths. - Fix the type name for the `DuplicateHeading` namedtuple type Frederick Muriuki Muriithi
2022-05-18Return errors when found or None otherwise...This commit adds a number of functions that return the error object when an error is found, or `None` otherwise. It avoids the use of exceptions as control flow constructs. Frederick Muriuki Muriithi
2022-04-25Call parsing function. Fix a few issues....* qc_app/entry.py: Pass filetype onward to parsing endpoint * qc_app/parse.py: Call the function(s) necessary to parse a file * quality_control/errors.py: Fix argument passing to super class Frederick Muriuki Muriithi
2022-04-20Fix linting issuesFrederick Muriuki Muriithi
2022-04-13Add test for duplicate headersFrederick Muriuki Muriithi
2022-04-13Implement test for parsing that fails...* Improve tests that ensure parsing fails in case the file has errors * Add strains.csv file * Implement minimum viable functionality that passes the implemented tests Frederick Muriuki Muriithi
2022-04-13Update Exception name...Change the exception name to be more descriptive. Frederick Muriuki Muriithi
2022-04-11Add tests for headers...* Add tests to check for validity of the headers * Add stubs for the tests Frederick Muriuki Muriithi
2022-04-11Implement tests and stubs for functions under testFrederick Muriuki Muriithi