| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 2024-07-25 | Rename module: qc_app --> uploader | Frederick Muriuki Muriithi | |
| 2024-07-22 | Handle generic errors for chunked uploads better. | Frederick Muriuki Muriithi | |
| 2024-07-01 | Respond with JSON. Handle error messages on UI. | Frederick Muriuki Muriithi | |
| 2024-07-01 | Check for genotype samples in the database | Frederick Muriuki Muriithi | |
| Check for genotype samples in both the R/qtl2 file and in the database. | |||
| 2024-06-27 | Handle chunks on backend and update UI with progress | Frederick Muriuki Muriithi | |
| Handle the uploaded chunks, enabling resumption of the upload if incomplete. Update the UI with the progress of the upload. | |||
| 2024-04-12 | Provide more relevant error message. | Frederick Muriuki Muriithi | |
| 2024-04-12 | Add missing return. | Frederick Muriuki Muriithi | |
| 2024-04-12 | Consistently check for possibly non-existent data | Frederick Muriuki Muriithi | |
| The "geno-dataset", "tissue", "pheno-study" and "pheno-dataset" data "objects" might not exist for a particular uploaded bundle, so we check in a consistent manner to ensure they are provided when needed. | |||
| 2024-04-12 | Provide tissue-id details to probeset dataset templates | Frederick Muriuki Muriithi | |
| 2024-04-08 | Add logging for IntegrityError | Frederick Muriuki Muriithi | |
| 2024-04-08 | Refactor: Make error-checking more robust | Frederick Muriuki Muriithi | |
| Rather than maintaining a dictionary of possible error-checking functions, this commit allows passing in the error-checking functions necessary for each point. This makes the code easier to extend by simply defining a new error-checking function and passing it in to the error-checking "driver". | |||
| 2024-04-08 | Fix pylint and mypy errors. | Frederick Muriuki Muriithi | |
| 2024-04-08 | bug: UI: Provide better error messaging. | Frederick Muriuki Muriithi | |
| 2024-04-08 | bug: Handle IntegrityError: Studies cannot have same name. | Frederick Muriuki Muriithi | |
| 2024-04-08 | bug: Check that Genotype dataset name is not duplicated. | Frederick Muriuki Muriithi | |
| 2024-04-05 | Handle exceptions creating ProbeSet datasets. | Frederick Muriuki Muriithi | |
| 2024-03-29 | Add UI to select/create tissue. | Frederick Muriuki Muriithi | |
| 2024-03-19 | Add debugging statements to track upload of R/qtl2 bundle. | Frederick Muriuki Muriithi | |
| 2024-02-15 | Refactor checking for user input errors. | Frederick Muriuki Muriithi | |
| 2024-02-15 | Verify that the file actually exist | Frederick Muriuki Muriithi | |
| In case a filename is provided, verify that the file actually exists in the upload directory. | |||
| 2024-02-15 | Provide only the file name, not full path. | Frederick Muriuki Muriithi | |
| There are 2 reasons to provide only the filename and not the full path: * Security: We do not want to inadvertently expose the paths to the outside world, or allow users to enter file system paths for this system. * The code does not assume a complete path, rather, it builds the path to the upload directory using the filename received from the user. | |||
| 2024-02-15 | Provide the log messages to the status page. | Frederick Muriuki Muriithi | |
| 2024-02-13 | Provide nice UI progress indicators. | Frederick Muriuki Muriithi | |
| 2024-02-12 | Check for errors in the 'phenose' file. | Frederick Muriuki Muriithi | |
| 2024-02-12 | Collect and display errors on 'geno' files in the bundle. | Frederick Muriuki Muriithi | |
| 2024-02-12 | UI: Provide QC successful results page | Frederick Muriuki Muriithi | |
| 2024-02-12 | Retrive and display generic bundle errors | Frederick Muriuki Muriithi | |
| Implement the first QC check for generic errors e.g. missing files in bundle, etc. Display retrieved errors on UI. | |||
| 2024-02-12 | Raise error if file is missing rather than returning a Union value. | Frederick Muriuki Muriithi | |
| 2024-02-12 | R/qtl2 QC: Set up scaffolding for QC UI | Frederick Muriuki Muriithi | |
| Set up the scaffolding for the flows and UI that will be used when running QC against the uploaded R/qtl2 bundle. This will be fleshed out later, and the UI is likely to change somewhat, down the line. | |||
| 2024-02-07 | ShortName is optional, remove check and set default | Frederick Muriuki Muriithi | |
| The ShortName is optional, and can be set to the same value as Name. This commit removes the check that made it mandatory. | |||
| 2024-02-07 | Prevent infinite redirect. | Frederick Muriuki Muriithi | |
| 2024-02-07 | Fix error display: setup correct error class | Frederick Muriuki Muriithi | |
| 2024-02-06 | Bug: Fix routing issues | Frederick Muriuki Muriithi | |
| Fix the routing issues that were redirecting the flow to the wrong endpoints. | |||
| 2024-02-05 | Fix linting and type errors. | Frederick Muriuki Muriithi | |
| 2024-02-05 | Do general bundle validation and show errors | Frederick Muriuki Muriithi | |
| * Display any and all errors on the UI * Move `validate_bundle` to QC module and refactor to use `missing_files` | |||
| 2024-01-23 | Update scripts to use redis prefix. | Frederick Muriuki Muriithi | |
| 2024-01-22 | scripts: Pass in logger to get detailed updates. | Frederick Muriuki Muriithi | |
| 2024-01-22 | UI: Show progress of R/qtl2 bundle processing. | Frederick Muriuki Muriithi | |
| 2024-01-19 | scripts: Process R/qtl2 bundle | Frederick Muriuki Muriithi | |
| Build script to start the processing of the R/qtl2 bundle. | |||
| 2024-01-18 | UI: Display summary information. | Frederick Muriuki Muriithi | |
| 2024-01-18 | UI: Create new ProbeSet dataset. | Frederick Muriuki Muriithi | |
| 2024-01-18 | UI: Select from existing ProbeSet datasets. | Frederick Muriuki Muriithi | |
| 2024-01-18 | Create new ProbeSet study. | Frederick Muriuki Muriithi | |
| 2024-01-17 | UI: Select ProbeSet study. | Frederick Muriuki Muriithi | |
| 2024-01-17 | UI: Implement creating new genotype datasets. | Frederick Muriuki Muriithi | |
| 2024-01-17 | UI: Initialise summary page. | Frederick Muriuki Muriithi | |
| 2024-01-17 | Enable selecting from existing genotype datasets. | Frederick Muriuki Muriithi | |
| 2024-01-17 | Update flash-messages' categories. | Frederick Muriuki Muriithi | |
| 2024-01-16 | UI: Create UI for creating a new Genotype dataset. | Frederick Muriuki Muriithi | |
| 2024-01-16 | UI: Create UI to select from existing genotype datasets. | Frederick Muriuki Muriithi | |
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index : gn-uploader | |
| gn-uploader: Data uploader for GeneNetwork |
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