aboutsummaryrefslogtreecommitdiff
path: root/README.org
AgeCommit message (Collapse)Author
2024-01-23Tests: Use prefixes in tests rather than starting redis serverFrederick Muriuki Muriithi
It's easier, and more robust to put the data under a prefix within a redis database rather than try to run a redis server, especially within the test environment. This commit updates the tests to use a redis prefix instead.
2024-01-08Add channel authorization.Frederick Muriuki Muriithi
2024-01-03Refactor: Extract potentially reusable functionsFrederick Muriuki Muriithi
The processing of transposed files is probably going to be very similar, thus the need to extract some reusable code from the geno-file-specific function in preparation.
2024-01-02Cleanup: Fix linting and typing errors and update docs.Frederick Muriuki Muriithi
2022-11-16ui: Only display the "alert-success" green on completionFrederick Muriuki Muriithi
* To avoid confusion, only display the "alert-success" green on completion of the parsing process. While parsing, if there are no errors, then display the "No errors found so far" message without the green colour.
2022-07-07Rework guix.scm to use latest commitFrederick Muriuki Muriithi
Rather than specifying a specific commit in the development guix.scm this commit has the system automatically get the latest commit and use that for building the package object.
2022-06-15Fix linting and type errorsFrederick Muriuki Muriithi
2022-05-27Update documentationFrederick Muriuki Muriithi
2022-05-27Revert "Accept exponential notation for standard-error files"Frederick Muriuki Muriithi
This reverts commit 960c1a5b831d8761a3e1716f86ded4cc5b67eea0. After meeting with Arthur, it was confirmed that the CSV file should not have values in the exponential notation.
2022-05-20Accept exponential notation for standard-error filesFrederick Muriuki Muriithi
2022-05-19Update Web-UI: use new error collection paradigmFrederick Muriuki Muriithi
- README.org: document how to run scripts manually - manifest.scm: remove python-rq as a dependency - qc_app/jobs.py: rework job launching and processing - qc_app/parse.py: use reworked job processing - qc_app/templates/job_progress.html: display progress correctly - qc_app/templates/parse_results.html: display final results - scripts/worker.py: new worker script
2022-05-11Document generating and running qc for/with dockerFrederick Muriuki Muriithi
2022-05-09Update documentation and licenseFrederick Muriuki Muriithi
Add documentation on how to run the development version of the GeneNetwork Quality Control application. Update the license to the agpl3+ license used by genenetwork3
2022-04-27Enable managing app via setup.pyFrederick Muriuki Muriithi
While the application is developed with GNU Guix, the end user might not be using it, and therefore, this commit provides a way for the user to install the application with the usual python package management systems.
2022-04-27Implement command-line interface for QC of filesFrederick Muriuki Muriithi
2022-04-25docs: update documentation on checksFrederick Muriuki Muriithi
2022-04-11Set up initial, failing tests for cell valuesFrederick Muriuki Muriithi
2022-04-11Initialise the QC repositoryFrederick Muriuki Muriithi