gn-uploader - gn-uploader: Data uploader for GeneNetwork

Age	Commit message (Collapse)	Author
6 days	Add function to read first 'n' lines of file as text.	Frederick Muriuki Muriithi

6 days	Add function to update a preview table.	Frederick Muriuki Muriithi

6 days	Display preview UI elements.	Frederick Muriuki Muriithi

6 days	Add template for tables to preview files' parsing.	Frederick Muriuki Muriithi

6 days	Move common sidebar content	Frederick Muriuki Muriithi

7 days	Use January as default month	Frederick Muriuki Muriithi
	Sometimes, the publication date only contains the year.
7 days	Handle error conditions	Frederick Muriuki Muriithi
	* Only fetch abstract details if the summary is successful * Indicate error if fetching summary fails
10 days	Separate bundle and individual files processing	Frederick Muriuki Muriithi
	Move the code processing the R/qtl2 bundle into a separate function and call it. Create a new (currently, failing) function to process the individual files.
10 days	Refactor template to extend common base	Frederick Muriuki Muriithi
	Extend the common base template in order to reuse the common parts for uploading phenotypes.
10 days	Allow choice between the two UI options	Frederick Muriuki Muriithi
	Allow the user to switch between using the R/qtl2 file format or uploading the individual files.
10 days	Use new templates:	Frederick Muriuki Muriithi

10 days	Rename template	Frederick Muriuki Muriithi
	Rename original template to indicate it uses the R/qtl2 bundle format.
10 days	Add page documentation.	Frederick Muriuki Muriithi

10 days	Prompt for the files.	Frederick Muriuki Muriithi

10 days	Prompt for file structure details.	Frederick Muriuki Muriithi

11 days	Add incomple template for uploading individual files.	Frederick Muriuki Muriithi

11 days	Create new base templates for upload of phenotype.	Frederick Muriuki Muriithi
	Implement the common UI features, for fetching publication details.
11 days	Update link text.	Frederick Muriuki Muriithi

13 days	Add menu entry for platforms in "View Species" page.	Frederick Muriuki Muriithi

13 days	Retain population for "List Markers" page	Frederick Muriuki Muriithi
	For UI consistency, and as a convenience to the users, retain the population details for the "List Markers" page to help them navigate more easily using the breadcrumbs.
13 days	Reorder menus in the populations page.	Frederick Muriuki Muriithi
	Make the order of the menus a little closer to the likely order of data upload.
13 days	Deactivate access to incomplete/unimplemented features.	Frederick Muriuki Muriithi

13 days	Redirect if there's only a single phenotype dataset	Frederick Muriuki Muriithi
	If a particular population has only a single phenotype dataset, redirect to the dataset view page rather than listing the only dataset.
13 days	Use specialised template renderer for phenotypes.	Frederick Muriuki Muriithi
	Use the specialised template renderer to keep the rendering consistent.
13 days	UI: Remove extraneous text in "View*" pages.	Frederick Muriuki Muriithi

13 days	Improve breadcrumbs	Frederick Muriuki Muriithi
	Update the breadcrumb links such that each will lead back the parent section rather than to generic section pages. This is updated for the relevant parts of the UI.
2024-12-09	Prevent user from continuing on error.	Frederick Muriuki Muriithi

2024-12-09	Prevent errors' table header from scrolling away.	Frederick Muriuki Muriithi

2024-12-09	Handle common typo likely to exist in control files.	Frederick Muriuki Muriithi

2024-12-03	Display the files metadata in progress section.	Frederick Muriuki Muriithi

2024-12-03	Retrieve job files metadata.	Frederick Muriuki Muriithi

2024-12-03	Fix some linting and mypy issues.	Frederick Muriuki Muriithi

2024-12-03	UI Styling: make table body text slightly smaller.	Frederick Muriuki Muriithi

2024-12-03	UI: Clip text that is too long.	Frederick Muriuki Muriithi

2024-12-03	Improve error text	Frederick Muriuki Muriithi
	Move the list to the end of the text to make it easier to clip text in the UI.
2024-12-03	Update file metadata using a mapping	Frederick Muriuki Muriithi
	Update the metadata using a mapping rather than updating a field at a time to make it easier to ensure everything is updated in one go.
2024-12-03	Provide consistent way to build file-specific fully-qualified keys	Frederick Muriuki Muriithi

2024-12-03	Improve UI: stdout/stderr output	Frederick Muriuki Muriithi
	Add styling to section and limit the height of the content.
2024-12-03	Display cell value	Frederick Muriuki Muriithi
	Display the cell value to enable the user compare the error message to the actual value, in order to figure out how to fix the error(s).
2024-12-03	Improve UI: Move if check out of table	Frederick Muriuki Muriithi
	Create a new section for the errors display, and only display the table if there is at least one error.
2024-12-03	Enable limiting of number of errors to fetch.	Frederick Muriuki Muriithi

2024-12-03	Save 'pheno' errors in redis as they are found.	Frederick Muriuki Muriithi

2024-12-03	Add some phenocovar metadata.	Frederick Muriuki Muriithi

2024-12-03	Fetch a jobs errors from its errors lists.	Frederick Muriuki Muriithi

2024-12-03	Save phenocovar errors in redis as they are found.	Frederick Muriuki Muriithi

2024-12-03	Pass the redis connection and fully qualified job id	Frederick Muriuki Muriithi
	Pass the redis connection on to the function used to build main since it might need to use a connection to redis. Also pass the computed fully qualified job id rather than recomputing it every time. Update dependent functions to take the new arguments.
2024-12-03	Cleanup linting and type (mypy) errors.	Frederick Muriuki Muriithi

2024-12-03	Wrap everything in try-catch to handle errors gracefully.	Frederick Muriuki Muriithi
	Put everything in the build_main function within a try-catch block to ensure we capture all exceptions that might occur in different scripts and log them out. This helps with debugging errors in the asynchronous scripts.
2024-12-02	Add emphasis to important point.	Frederick Muriuki Muriithi

2024-12-02	Fix typo.	Frederick Muriuki Muriithi