gn-uploader - gn-uploader: Data uploader for GeneNetwork

Age	Commit message (Expand)	Author
2024-01-09	WIP: Install genotypes from R/qtl2 bundle	Frederick Muriuki Muriithi
2024-01-09	Raise exception on reading non-existing file	Frederick Muriuki Muriithi
2024-01-09	Fix linting errors	Frederick Muriuki Muriithi
2024-01-09	scripts: Log to redis	Frederick Muriuki Muriithi
2024-01-08	Add channel authorization.	Frederick Muriuki Muriithi
2024-01-08	Fix errors with types.	Frederick Muriuki Muriithi
2024-01-08	Upload R/qtl2 zip bundle and check for errors.	Frederick Muriuki Muriithi
2024-01-08	Implement "create-population" route.	Frederick Muriuki Muriithi
2024-01-08	Implement "POST" path for "select-population" route.	Frederick Muriuki Muriithi
2024-01-08	Use extracted functions and fix bugs	Frederick Muriuki Muriithi
2024-01-08	Extract common database functions into a separate package.	Frederick Muriuki Muriithi
2024-01-05	Improve styling.	Frederick Muriuki Muriithi
2024-01-05	UI to select the population under which the data falls.	Frederick Muriuki Muriithi
2024-01-05	Initialise R/qtl2 bundle upload path	Frederick Muriuki Muriithi
2024-01-05	Add missing import.	Frederick Muriuki Muriithi
2024-01-05	Revert "QC: Check for only one decimal place."	Frederick Muriuki Muriithi
2024-01-04	Parse sex information from R/qtl bundle.	Frederick Muriuki Muriithi
2024-01-04	Parse cross information from R/qtl2 bundle.	Frederick Muriuki Muriithi
2024-01-04	Process sex and cross information data in "covar" files.	Frederick Muriuki Muriithi
2024-01-04	Rename test module	Frederick Muriuki Muriithi
2024-01-04	Parse multiple files with same file key.	Frederick Muriuki Muriithi
2024-01-04	Test parsing of multiple files for single key	Frederick Muriuki Muriithi
2024-01-04	Add tests for parsing cross information (covar) files.	Frederick Muriuki Muriithi
2024-01-04	Add tests for parsing 'phenocovar' files.	Frederick Muriuki Muriithi
2024-01-04	Rename test module.	Frederick Muriuki Muriithi
2024-01-03	Use generic parser. Remove obsoleted functions.	Frederick Muriuki Muriithi
2024-01-03	Parse founder_geno files. Generalise parsing files.	Frederick Muriuki Muriithi
2024-01-03	Add tests for `founder_geno` parsing.	Frederick Muriuki Muriithi
2024-01-03	Parse the phenotype data from the R/qtl2 bundle.	Frederick Muriuki Muriithi
2024-01-03	Rename argument and add documentation to functions.	Frederick Muriuki Muriithi
2024-01-03	Extract processing of transposed files into reusable function.	Frederick Muriuki Muriithi
2024-01-03	Refactor: Extract potentially reusable functions	Frederick Muriuki Muriithi
2024-01-02	Inherit from `gnqc-py` in `guix-bioinformatics`.	Frederick Muriuki Muriithi
2024-01-02	Cleanup guix definitions in preparation for deployment.	Frederick Muriuki Muriithi
2024-01-02	Mark tests as unit tests.	Frederick Muriuki Muriithi
2024-01-02	Abstract away non-transposed file processing	Frederick Muriuki Muriithi
2024-01-02	Cleanup: Fix linting and typing errors and update docs.	Frederick Muriuki Muriithi
2023-12-28	Rework parsing of transposed geno files.	Frederick Muriuki Muriithi
2023-12-28	Handle transposed geno files.	Frederick Muriuki Muriithi
2023-12-27	Tests: Test parsing of non-transposed geno files.	Frederick Muriuki Muriithi
2023-12-27	Tests: Test parsing of pmap files. Merge testing of map files.	Frederick Muriuki Muriithi
2023-12-27	Tests: Add tests for parsing gmap files.	Frederick Muriuki Muriithi
2023-12-25	Generalise to read both genetic and physical maps.	Frederick Muriuki Muriithi
2023-12-25	Read genetic map files	Frederick Muriuki Muriithi
2023-12-20	Read genotype files	Frederick Muriuki Muriithi
2023-12-20	Read R/qtl2 format files	Frederick Muriuki Muriithi
2023-12-20	Add `pyyaml` as a dependency.	Frederick Muriuki Muriithi
2023-12-20	Provide instance_path at client creation.	Frederick Muriuki Muriithi
2023-12-20	Stop relying on "GUIX_ENVIRONMENT" envvar	Frederick Muriuki Muriithi
2023-12-20	Reduce table columns	Frederick Muriuki Muriithi